Gene detail information of Glyur000078s00005421 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT4G34555.1 | 2.00E-33 | Ribosomal protein S25 family protein |
| NR | NP_001236341.1 | 1.72E-70 | uncharacterized protein LOC100499810 [Glycine max] |
| Swissprot | tr|Q9T029|RS254_ARATH | 7.00E-54 | 40S ribosomal protein S25-4 |
| trEMBL | tr|C6SWX1|C6SWX1_SOYBN | 6.00E-71 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA04G01270.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00078 | 251718 | 253456 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000078s00005421.1 | PF03297.10 | Ribosomal_S25 | 1 | 106 | 6.40E-48 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 176.492 |
| SRR1783600 | control | 176.080 |
| SRR1783602 | moderate drought stress | 135.787 |
| SRR1811619 | moderate drought stress | 134.793 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 269.477 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 267.778 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 147.371 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 144.681 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 220.128 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 219.382 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 98.032 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 97.193 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 344.613 |
| SRR2868004 | Drought Stress (root) | 241.067 |
| SRR2967015 | Control (root) | 223.972 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 141.622 |
| SRR9715740 | Leaf | 130.817 |
| SRR9715741 | Leaf | 138.018 |
| SRR9715739 | Root | 112.448 |
| SRR9715742 | Root | 150.839 |
| SRR9715743 | Root | 137.398 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 794.275 |
| SRR8749028 | MeJA induced 9h | 274.824 |
| SRR8749029 | MeJA induced 9h | 525.690 |
| SRR8749030 | Uninduced | 127.178 |
| SRR8749031 | Uninduced | 96.908 |
| SRR8749032 | Uninduced | 153.784 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 281.872 |
| SRR8400027 | Control - Root | 251.401 |