Gene detail information of Glyur000078s00005402 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT2G21620.1 | 5.00E-71 | Adenine nucleotide alpha hydrolases-like superfamily protein |
| NR | XP_003603940.1 | 1.21E-103 | Universal stress protein A-like protein [Medicago truncatula] |
| COG | YP_520940.1 | 9.00E-11 | hypothetical protein DSY4707 [Desulfitobacterium hafniense Y51] |
| Swissprot | tr|Q8LGG8|USPAL_ARATH | 2.00E-09 | Universal stress protein A-like protein |
| trEMBL | tr|B7FMY9|B7FMY9_MEDTR | 5.00E-104 | Uncharacterized protein {ECO:0000313|EMBL:AFK47804.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00078 | 191023 | 198323 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000078s00005402.1 | PF00582.21 | Usp | 41 | 168 | 1.00E-24 |
| Glyur000078s00005402.2 | PF00582.21 | Usp | 41 | 166 | 5.70E-21 |
| Glyur000078s00005402.3 | PF00582.21 | Usp | 41 | 99 | 1.10E-06 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 3.464 |
| SRR1783600 | control | 3.343 |
| SRR1783602 | moderate drought stress | 4.874 |
| SRR1811619 | moderate drought stress | 4.389 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 7.078 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 7.054 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 23.489 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 21.870 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 14.018 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 15.184 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 6.285 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 6.032 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 30.047 |
| SRR2868004 | Drought Stress (root) | 51.932 |
| SRR2967015 | Control (root) | 46.601 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 107.929 |
| SRR9715740 | Leaf | 32.206 |
| SRR9715741 | Leaf | 199.150 |
| SRR9715739 | Root | 11.519 |
| SRR9715742 | Root | 21.787 |
| SRR9715743 | Root | 18.106 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 93.695 |
| SRR8749028 | MeJA induced 9h | 37.455 |
| SRR8749029 | MeJA induced 9h | 98.492 |
| SRR8749030 | Uninduced | 23.578 |
| SRR8749031 | Uninduced | 11.145 |
| SRR8749032 | Uninduced | 39.196 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 26.686 |
| SRR8400027 | Control - Root | 23.818 |