Gene detail

Gene detail information of Glyur000078s00005400

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT4G34530.1	1.00E-42	cryptochrome-interacting basic-helix-loop-helix 1
NR	XP_003522925.1	8.08E-154	PREDICTED: transcription factor bHLH63-like [Glycine max]
Swissprot	tr\|Q8GY61\|BH063_ARATH	3.00E-49	Transcription factor bHLH63
trEMBL	tr\|I1JSN9\|I1JSN9_SOYBN	3.00E-154	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA04G01400.2}

Sequence

Transcript Sequence

>Glyur000078s00005400.1
TTCACTCATTCTTTCTCCTGCTCCTATAATATTCATTCTGCACCTTCATCACCTCACAAGAGCTTCGTGTGTTGGGCATGACGGTGTAACTGACCCTACTTTACTTTCCTCTGAAGTATCCTTCTCTACCGCCCTTTTTTTTTCACNNACCGTCTGCAAAAACTGAGCCACACCCATCCACATATAACAATCGCCCTCTGTTTCAACAAGAAGAAGCTAAAGCAGTACACACTATCACTATTCTTAGTACCTATTCTATTCTATTATAGTATTGCCTATTGCCTAATCCTAATTAATAGTTAAGTATTAATTAATTTAGTAATAACAAGACAATTAAGATGTTGCACTGTCTGAATACTTCGGGGAATCTAGTTGGGAGCTGTTCCGATATGACAGTGTTGGAGAGGCAAAGGCCAAGGGTCAAGTGGCAACAACAACAAGACCAGCAAGGCCACTTTTCTGGAACTGCCTTCAACGGTGTGTTCTCCTCTTCTTCTTCTTCTTCTTCTTCTCTGCAGCAACAATTTCAGCATCAGCATCATTCTCAGGGGTCCATGATGATGATCGCTGCTGCTGATTCCGGTGGTTCTTCACTTTCTGAGGTAGTGGCTCAGTCCTCAATCAAGCCTGCCCCAGGAGNGTTGAACTTGAACCAGTTTCAAATACCAACTGCTCCTTCTCCTTCTGCTTCTGGCTTTGATGTGAATTCTTCAATTTCAAGGACTTTTAGCTGCCCACCTGCTCTGGCACAGGCCAAAAAAGGCACAGTCTTTTCAATTGGGAAAGAGAGTTTCAAGAAAAGGAAATCTGAAAAGGCTCAGAATCATCTCAAGGTTGTTGCAGAAAATGATAACAAAGACAAGAGGATCAAAGTGGTTGCTGAGGATGGGGAATCCAAAATCACAGGGCAACCCAGCACCAAGAATAACACAAACAGCAACAGCAACAACAAACAGAACTGTGCGGATAAGGAAAATTCAAAGGCTTCTGAGGTTCAAAAGCCTGACTATATTCATGTTNGAGCACGTCGTGGCCAAGCCACTGATAGCCATAGCTTAGCTGAAAGAGTCAGAAGGGAAAAGATTAGCGAGAGAATGAAGTATTTACAAGATTTAGTACCCGGTTGCAACAAGATCACAGGAAAAGCTGGAATGCTTGATGAAATCATCAACTATTTCTTGTCAATGAAATTAGCTGCAGTGAACCCAAGGCTTGACTTCAATGTTGATGATCTGTTTGACAAAGAGGTGTTTCCTACTTGTGATGCAACTTTTCCAATTCCAGCCATGGGGATGTCATCATCAGACATCATGAATAACCACCCTGCATTTCTTCAGTTCAATTCACCGCAGCAAATTGTTCCCTATGGTGGGTTAGAATCCACGGGTATGAACCCTTCAGATATGGGACTTAGAAGGACCANAAGTGCACCTGTATCCATGCCTGAAACGTTTCTTTACTCATCCTGTTTCTCTCAAATTCTACCCTCCACAACTTGGGAAGGTGATTTCCAAAACCTTTACAACTTGAGTTTTGATCAACCACGAGCTACTACATCCTTTCCTTGTCAGCTATTCACAGGTTAG

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00078	183019	185321	+

Gene family

Gene family	subfamily
Transcription Factors Family	bHLH

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

molecular_function
GO:0046983 protein dimerization activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000078s00005400.1	PF00010.21	HLH	237	283	7.30E-06

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	1.398
SRR1783600	control	1.384
SRR1783602	moderate drought stress	1.416
SRR1811619	moderate drought stress	1.398

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	2.181
DRR006520	Root Summer glycyrrhizin high producing strain	2.210
DRR006521	Root Winter glycyrrhizin high producing strain	0.070
DRR006522	Root Winter glycyrrhizin high producing strain	0.068
DRR006523	Root Summer glycyrrhizin low producing strain	1.215
DRR006524	Root Summer glycyrrhizin low producing strain	1.295
DRR006525	Leaf Summer glycyrrhizin high producing strain	9.815
DRR006526	Leaf Summer glycyrrhizin high producing strain	10.291

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	5.635
SRR2868004	Drought Stress (root)	3.115
SRR2967015	Control (root)	4.877

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	13.321
SRR9715740	Leaf	6.305
SRR9715741	Leaf	12.404
SRR9715739	Root	0.991
SRR9715742	Root	2.901
SRR9715743	Root	1.349

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	3.749
SRR8749028	MeJA induced 9h	1.224
SRR8749029	MeJA induced 9h	1.862
SRR8749030	Uninduced	0.106
SRR8749031	Uninduced	0.046
SRR8749032	Uninduced	0.027

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	1.455
SRR8400027	Control - Root	1.661