Gene detail

Gene detail information of Glyur000078s00005395.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT1G19440.1	8.00E-170	3-ketoacyl-CoA synthase 4
NR	XP_007136167.1	0	hypothetical protein PHAVU_009G023600g [Phaseolus vulgaris]
COG	NP_285649.1	2.00E-12	chalcone synthase [Deinococcus radiodurans R1]
Swissprot	tr\|Q9LN49\|KCS4_ARATH	0	3-ketoacyl-CoA synthase 4
trEMBL	tr\|V7AVD2\|V7AVD2_PHAVU	0	3-ketoacyl-CoA synthase {ECO:0000256\|PIRNR:PIRNR036417}

Sequence

Transcript Sequence

>Glyur000078s00005395.1
GCCGGGAGGTGGAAAGACAATTTAGAACCTCCAATTAAAAAAGATGTTTGATTAAAATTTCAAATCTAAAGCCTCAACGGACGGATAATACTGTATACATCTACCCTCCCTATGCCTACATCATGGGAGCCTCATGCACAGAATCACCTTTTTTTATGTAAAAAATACAATCTAAAATGAATTTTCCCACTGTTAAGATATATAAGAAACAAACACTAGAACAGATAATCACATTGAGTGANTAATTACTAATATCACAAAAGTCAAGAGAGTGAAAGAAGCAACATTGAAGCCTGCGCTCGCCACTTCTCTGCCTTTGACCGTCACGGCGTCACCCATCTCTCCTATAAATATTTCCTTTCTGCCTTTCCATTGCATTCCCAAAACCCAAACTTTCCTTGTTAGTTGCTTCAATTCCTGTCCTCGTTGTGGTTGGCATCATCCCCCACCAAAACACCGTGCTACGTGTTCCTCTTTTTTTTTATCCCCCTCTGTTGTGGCCGTTGTTGCAGTTGTATCAAACCCAACCCCAGAGCCCCTCATAAGCCATCTAATCCACATTTCCACTCCCCACCCCACTATATAATCACACCATTCATTCATTCATTCATTCATTCATTCATTCCGTACCATTTTGCAACCCAAATTCTCCATTTTTCAATCCAATCCACAATGAGTTCCTCCCCTGCCACCACCACCACCTCCAACACCAATAGTGTAAAGCTCAAGTACGTGAAACTGGGCTACCANTACCTGATCACACACTTGTGGACCCTATGCTTGGTTCCTCTCATCTCCATCCTCTNATCACCTCATGACATTCACATTCACTACCTCTGGCTCCAGCACAACCCCATCACCTTCATCATCTTTTCCACCGTTCTCGTTTTGGGACTCACCCTCTACATAATGACCCGTCCGAGACCCGTGTACCTGGTGGATTACTCTTGCTATAGACCCCCTCACCATCTCCGCGTGCAGTTCCACCAGTTCATGGAACATTCGAGGCTCACGGGTGACTTCAACGACCCCTCCCTCGAGTTCCAGCGAAGGATCTTGGAACGCTCTGGCCTCGGCGAAGACACCTACGTCCCCGAAGCCATGCATTCCATCCCTCCAACTCCTTCGATGGCCGCCGCAAGACAAGAGGCCGAACAGGTTCTTGATTCTTANGCCTAACTCATCCCTATAAAATCAACTTCTAAAGTGTCCTGCTTTGTATACTAAATTTTATTTTAAACCTTATCTCTAATTGACGTGGGACTTGAGTTTTTCCCGGTACAGGTTATGTTTGGTGTCCTCGACAACCTCTTTGCCAACAACACAAACGTCAAGCCAGACGACATTGGGATCCTTGTNGTTAACTGCAGCCTCTTCAATCCAACTCCTTCGCTTTCTGCTATGATAGTCAACAGGTACAAGCTGAGAANTAATATTAGGAGCTTCAACTTGGGTGGCATGGGTTGCAGTGCGGGTGTCATCGCCATTGATCTCGCCAAAGACATGCTTCAGGTTCACAGGACCACTTACGCGGTTGTGGTCAGCACCGAGAACATTACTCAGAATTGGTACTTTGGGAACAACAAGTCCATGTTGATACCCAATTGTCTGTTCCGTGTTGGTGGGGCAGCGGTTCTGCTTTCCAACAGGGCCTGTGATAAACGACGAGCCAAGTACAAGCTGGTTCATGTGGTGAGAACGCATAAAGGTGCAGACGACAAGGCGTTTCGGTGCGTGTATCAGGAAGAGGATGGTGATGGGAAAACGGGGGTGTCTCTGTCGAAGGATCTCATGGCTATTGCTGGTGGGGCCCTCAAGAGTAACATCACTACATTGGGCCCCCTTGTTCTTCCCATAAGCGAGCAGCTTCTCTTCTTTCTCACCTTGGTCGCCAAGAAGGTTTTTAGTGCCAACAAGGTGAAGCCTTATATCCCAGATTTCAAGCTTGCTTTCGATCATTTCTGCATTCATGCGGGTGGGAGAGGAGTGATCGATGAACTGGAGAGGAACCTGCAGCTTCTGCCGGAGCACGTTGAGGCTTCAAGGATGACGCTGCACAGATTTGGGAACACTTCGTCGAGTTCCATTTGGTATGAGTTGGCTTACACGGAGGCGAAGGGTAGGATGAGGAAGGGGAACAGGGTGTGGCAGGTTGCGTTTGGGAGTGGGTTTAAGTGTAACAGTGCGGTGTGGGAGGCACTGAGACATGTCAACCCCTCACCCAACAGTCCTTGGGAAGATTGCATTCATAGGTACCCTGTTCACATTGTTACATAGTATTAGTGTATCAGTTACATTAAGCTCTCTTGCTTCGTCTGAAAGAAATTAACATTTACCTTCAAATTCATTCGGGGCCAGGGTATATGTCCTTTGTTCTANAATACATAGCTTACAAGTATCTTGGTCATTCTTGTTCGGAATATCTAGTGTTAATATCTTGTGTGTATCCGTTGGTTCAAACTTCAAAGTCAAACGTTGTCCAGAGAGAGAGAGAGCTCGTGTAATTTATTAAATTTAATTGTAGTCACTCTTAAGCGGACATGGATCCTCTACAGCCACTGCAGAGGCTGCAGAGAGATCCACTCTCTCTGTCTCTCTCCTCATTTTTCTCTCTCTCTTACTTTTTTCTCTCTCTTCCCTCACTCACAACACCCTACTGCAGACCTCTGCAGCAGGGGATCCAGAGTGCTCTTAAGCACTCACCCCCTCCCCCCAATGGCATTTGTTGTACATGAAGTTGCAGATCAGTCAATTGTGCAAAGTAACAGACTAGAAATACTCGCGTGAAAGTGTTCATTCATTGTATGTATAATGTAGCAGATGAAACAAATCTTAGGATCAATCAATTTGGTGAAACAAATCCCATAAGATGTCCCTAGTCACAAATTACCAACTTAATGTTACTATTCAAGTTTTTATTATGAAGAGATTTGTAAATGAAAAATCACTAAAAATTGATTAGGACATTATTTTTCCATTTCACTCAACATAAGGTCTTCAATAACTGATACAGAGCCCCTATGAATTTTGTGACTCAGTTNAGACAATCAAATAAATAAATCAAATCTTATCAAACAAGCAAAGCTGTCTTTCATCGCTTTTGACTGCCTAATCATAATTATATTTCCCTTTCTAAGAGCTTCCAATTGGGTGCATATAACAACACTCACTGAATTAATGAAATTTAGCCCATGTTCAAAAAAAAATTGCTGACAAATTATAGACCTGTGCTGTGGTTTTGAGACGCAGTTGAAAAAAAACACACATCNTTATCCCAAATTCAATATTTAACATTTAATTTAACACTCCTACTTAATATAATGAAATAAAATGTATATAAATTAAAAATAACGGTGATGGGATACTCTCGACTTAGAATAAAAAAAAACAAAAAATAACGTTAAAATGTAAGATAAGACATTAGGAATGGCTCCTCCCTTCAAATTAGGCCATGCTTCTTGTGTTGAACCAAAAAGACAGCTCCCGATAGCTCACAAATAATATTTGTTAATTTATTTGAACCAAAAAGGCCATGCTTCTTTATGGCCTCTACCTATTCNAGCATCCATAATCCATATCAGTAANAAAAATCAACAGTTTCAAAACTCATTGTTGAATCTATAATTGTTTAAAAACGGACAGTTATTAATTTGAGACGGGAAAGAATTGACAAATAATTATGAAAAAATATGGCATCTTCAATAATTGATCCTATNTTGGATGGCTGATTCCTACCAGCGATTAAATTTCCCTTTGGAACGGCTAATTTGATTTGTGTTAATAGAAATAAAGTAACTGATTGAACGGGCAATTGTAGTGAGAACAGAAAACATAAATCAGTAAAAACCCTCGGGTCATGATTTCTGACTATTCTTTTAATGGACTGTTTATGAACAACCAGTACACAAATTCAGAGGTCAAAAACGAGAANCACAGGACGAACGCGAAACCAGAAACGGAAACCAGAACCAGAACAGGATACTCAAACCACAAAGGATATTTCAAATCGAAACATAATCAAGGGATAGTCCACAACATCCCCTTTCAATCTAAAATCCTAAATCCAACATTAACTCCGCCAGCTTCCATCAGAAGCACCACCGCCCCTCGAGTAGCGGGACCCGCCGTCTCCATATCCACTGTCTCGTCCACCGCCATAGCCACCTCCTCCACCATAGCCGCCGCCGCCGCCATAGCCACCACCACCGCCGTTGCGGTTGTAGCCGCCACCGCCTTCACGACGGCCACCACCACCTCCATAACCTCCGCCACCGCGGCTGTAACCGCCGCCGCCACCGTATCCGCCTCCATAACCGCCTCCACCTCCGCCCCTTCCGCGGGACTGAGCCTCGTTCACTGTAATGTTACGACCATCAAGGTTCTGGCCATTCATTCCTTCGATGGCNTCCCTCATGGCCTGCTCCGTAGCGAAGGTGACAAATCCAAACCCTCTCGATCTTCCGGTCTCACGATCGTTGATGACCTGAACATAAAAAAACAGAAACAATCGCATCAGATCTAGGCTCTCAGATCCACACAAATTATCATGGAATAGAAAGAAAAAAAACATATTGCAACCGATCGATCTTCGCCTTTGAATCAAAGATGAAGATGAACGTACCGATTTGGTGTGATTAATAAAAGAATCAACATCAACATAGTAACACAAGTATCATAGATCAAGTAACAGCAAAACAGATCAGAGAGCACAGATCAGATGGGATCGCGAAAACGCAAATCCAAATCGTGTCAGATCCGATCCCTGCAACAAACGGACCTTCGATTCGACGATCTCGCCATAGGGAGAAAAAGCTTTCTCGAGAGCATCATTGTCGGTGGCCCAGGCAAGCCCACCAACAAAGCATCGGTACTCAATTTCTGCAGAAGCCATTGGAAACTAGAAAACCTAGAGAACGGGGACAAAAAGGGAAAAGAAAAGGAGGATTAGCGAGAATCCACCTTGAAGAGAGAGCACGAAGGGAAATGGCTACCCCTAATGCCCTCTTATATAGCAGAGGATATTTTTTAACCCGGGTTAACCTTCCNCCGACTCTGGGTCCTATACGCCGCGCGATTTAAACCCGGGTTAAACTTGGACCGGTGTGGAGCGTGGATCTGATTCCCCGTGTTCGTTTACAGAGACAACTGTCTATATAGTTCTTTTATCCTCCCCTTAACAATAATCTTCGTTGACCCAAAAAGAAAAACAATAATCTTGATTCTTTA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00078	158934	164316	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
K15397	KCS	EC:2.3.1.199	Fatty acid elongation	map00062

Gene Ontology

biological_process

GO:0006633 fatty acid biosynthetic process

GO:0008152 metabolic process

GO:0008610 lipid biosynthetic process

cellular_component
GO:0016020 membrane

molecular_function

GO:0003824 catalytic activity

GO:0016747 transferase activity, transferring acyl groups other than amino-acyl groups

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000078s00005395.1	PF08392.7	FAE1_CUT1_RppA	1	205	1.10E-109
Glyur000078s00005395.1	PF08541.5	ACP_syn_III_C	223	303	5.70E-12

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	30.138
SRR1783600	control	19.971
SRR1783602	moderate drought stress	35.300
SRR1811619	moderate drought stress	32.735

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	52.944
DRR006520	Root Summer glycyrrhizin high producing strain	63.177
DRR006521	Root Winter glycyrrhizin high producing strain	91.084
DRR006522	Root Winter glycyrrhizin high producing strain	80.298
DRR006523	Root Summer glycyrrhizin low producing strain	129.496
DRR006524	Root Summer glycyrrhizin low producing strain	118.485
DRR006525	Leaf Summer glycyrrhizin high producing strain	37.985
DRR006526	Leaf Summer glycyrrhizin high producing strain	30.452

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	48.527
SRR2868004	Drought Stress (root)	53.053
SRR2967015	Control (root)	107.825

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	17.820
SRR9715740	Leaf	21.218
SRR9715741	Leaf	24.116
SRR9715739	Root	32.461
SRR9715742	Root	36.776
SRR9715743	Root	39.004

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	32.780
SRR8749028	MeJA induced 9h	36.746
SRR8749029	MeJA induced 9h	46.790
SRR8749030	Uninduced	51.679
SRR8749031	Uninduced	46.807
SRR8749032	Uninduced	45.348

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	33.383
SRR8400027	Control - Root	41.491