Gene detail

Gene detail information of Glyur000078s00005394

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT2G21660.2	6.00E-35	cold, circadian rhythm, and rna binding 2
NR	XP_003527212.1	1.35E-51	PREDICTED: glycine-rich RNA-binding protein 7 [Glycine max]
COG	YP_003267833.1	5.00E-24	RNP-1 like RNA-binding protein [Haliangium ochraceum DSM 14365]
Swissprot	tr\|P49310\|GRP1_SINAL	3.00E-44	Glycine-rich RNA-binding protein GRP1A
trEMBL	tr\|K7KSG7\|K7KSG7_SOYBN	4.00E-52	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA06G01471.2}

Sequence

Transcript Sequence

>Glyur000078s00005394.1
CAAGTACAATCAGATCATTTGATTGATTCGACTGTATATAAGTACTATACTATACTATACTATACTATACTATACTATGATAGTATTCATTAACCCAATAAAAGGTAAAGAATCAAGATTATTGTTTTTCTTTTTGGGTCAACGAAGATTATTGTTAAGGGGAGGATAAAAGAACTATATAGACAGTTGTCTCTGTAAACGAACACGGGGAATCAGATCCACGCTCCACACCGGTCCAAGTTTAACCCGGGTTTAAATCGCGCGGCGTATAGGACCCAGAGTCGGNGGAAGGTTAACCCGGGTTAAAAAATATCCTCTGCTATATAAGAGGGCATTAGGGGTAGCCATTTCCCTTCGTGCTCTCTCTTCAAGGTGGATTCTCGCTAATCCTCCTTTTCTTTTCCCTTTTTGTCCCCGTTCTCTAGGTTTTCTAGTTTCCAATGGCTTCTGCAGAAATTGAGTACCGATGCTTTGTTGGTGGGCTTGCCTGGGCCACCGACAATGATGCTCTCGAGAAAGCTTTTTCTCCCTATGGCGAGATCGTCGAATCGAAGGTCATCAACGATCGTGAGACCGGAAGATCGAGAGGGTTTGGATTTGTCACCTTCGCTACGGAGCAGGCCATGAGGGANGCCATCGAAGGAATGAATGGCCAGAACCTTGATGGTCGTAACATTACAGTGAACGAGGCTCAGTCCCGCGGAAGGGGCGGAGGTGGAGGCGGTTATGGAGGCGGATACGGTGGCGGCGGCGGTTACAGCCGCGGTGGCGGAGGTTATGGAGGTGGTGGTGGCCGTCGTGAAGGCGGTGGCGGCTACAACCGCAACGGCGGTGGTGGTGGCTATGGCGGCGGCGGCGGCTATGGTGGAGGAGGTGGCTATGGCGGTGGACGAGACAGTGGATATGGAGACGGCGGGTCCCGCTACTCGAGGGGCGGTGGTGCTTCTGATGGAAGCTGGCGGAGTTAATGTTGGATTTAGGATTTTAGATTGAAAGGGGATGTTGTGGACTATCCCTTGATTATGTTTCGATTTGAAATATCCTTTGTGGTTTGAGTATCCTGTTCTGGTTCTGGTTTCCGTTTCTGGTTTCGCGTTCGTCCTGTGNTTCTCGTTTTTGACCTCTGAATTTGTGTACTGGTTGTTCATAAACAGTCCATTAAAAGAATAGTCAGAAATCATGACCCGAGGGTTTTTACTGATTTATGTTTTCTGTTCTCACTACAATTGCCCGTTCAATCAGTTACTTTATTTCTATTAACACAAATCAAATTAGCCGTTCCAAAGGGAAATTTAATCGCTGGTAGGAATCAGCCATCCAANATAGGATCAATTATTGAAGATGCCATATTTTTTCATAATTATTTGTCAATTCTTTCCCGTCTCAAATTAATAACTGTCCGTTTTTAAACAATTATAGATTCAACAATGAGTTTTGAAACTGTTGATTTTTNTTACTGATATGGATTATGGATGCTNGAATAGGTAGAGGCCATAAAGAAGCATGGCCTTTTTGGTTCAAATAAATTAACAAATATTATTTGTGAGCTATCGGGAGCTGTCTTTTTGGTTCAACACAAGAAGCATGGCCTAATTTGAAGGGAGGAGCCATTCCTAATGTCTTATCTTACATTTTAACGTTATTTTTTGTTTTTTTTTATTCTAAGTCGAGAGTATCCCATCACCGTTATTTTTAATTTATATACATTTTATTTCATTATATTAAGTAGGAGTGTTAAATTAAATGTTAAATATTGAATTTGGGATAANGATGTGTGTTTTTTTTCAACTGCGTCTCAAAACCACAGCACAGGTCTATAATTTGTCAGCAATTTTTTTTTGAACATGGGCTAAATTTCATTAATTCAGTGAGTGTTGTTATATGCACCCAATTGGAAGCTCTTAGAAAGGGAAATATAATTATGATTAGGCAGTCAAAAGCGATGAAAGACAGCTTTGCTTGTTTGATAAGATTTGATTTATTTATTTGATTGTCTNAACTGAGTCACAAAATTCATAGGGGCTCTGTATCAGTTATTGAAGACCTTATGTTGAGTGAAATGGAAAAATAATGTCCTAATCAATTTTTAGTGATTTTTCATTTACAAATCTCTTCATAATAAAAACTTGAATAGTAACATTAAGTTGGTAATTTGTGACTAGGGACATCTTATGGGATTTGTTTCACCAAATTGATTGATCCTAAGATTTGTTTCATCTGCTACATTATACATACAATGAATGAACACTTTCACGCGAGTATTTCTAGTCTGTTACTTTGCACAATTGACTGATCTGCAACTTCATGTACAACAAATGCCATTGGGGGGAGGGGGTGAGTGCTTAAGAGCACTCTGGATCCCCTGCTGCAGAGGTCTGCAGTAGGGTGTTGTGAGTGAGGGAAGAGAGAGAAAAAAGTAAGAGAGAGAGAAAAATGAGGAGAGAGACAGAGAGAGTGGATCTCTCTGCAGCCTCTGCAGTGGCTGTAGAGGATCCATGTCCGCTTAAGAGTGACTACAATTAAATTTAATAAATTACACGAGCTCTCTCTCTCTCTGGACAACGTTTGACTTTGAAGTTTGAACCAACGGATACACACAAGATATTAACACTAGATATTCCGAACAAGAATGACCAAGATACTTGTAAGCTATGTATTNTAGAACAAAGGACATATACCCTGGCCCCGAATGAATTTGAAGGGTACCTATGAATGCAATCTTCCCAAGGACTGTTGGGTGAGGGGTTGACATGTCTCAGTGCCTCCCACACCGCACTGTTACACTTAAACCCACTCCCAAACGCAACCTGCCACACCCTGTTCCCCTTCCTCATCCTACCCTTCGCCTCCGTGTAAGCCAACTCATACCAAATGGAACTCGACGAAGTGTTCCCAAATCTGTGCAGCGTCATCCTTGAAGCCTCAACGTGCTCCGGCAGAAGCTGCAGGTTCCTCTCCAGTTCATCGATCACTCCTCTCCCACCCGCATGAATGCAGAAATGATCGAAAGCAAGCTTGAAATCTGGGATATAAGGCTTCACCTTGTTGGCACTAAAAACCTTCTTGGCGACCAAGGTGAGAAAGAAGAGAAGCTGCTCGCTTATGGGAAGAACAAGGGGGCCCAATGTAGTGATGTTACTCTTGAGGGCCCCACCAGCAATAGCCATGAGATCCTTCGACAGAGACACCCCCGTTTTCCCATCACCATCCTCTTCCTGATACACGCACCTGAAAAAAAANAAAANAATTGATAGACATCTCAATCTCAATTTACACCCAGAGAGCGAGCTAGAAATAGAATATAGATGAGCAATAGATGTTATAGAGATAAATGATGTTACAAGAAGAGAGAAATAGTTGTCCAAAAATTATAACTCATACACACCGAAACGCCTTGTCGTCTGCACCTTTATGCGTTCTCACCACATGAACCAGCTTGTACTTGGCTCGTCGTTTATCACAGGCCCTGTTGGAAAGCAGAACCGCTGCCCCACCAACACGGAACAGACAATTGGGTATCAACATGGACTTGTTGTTCCCAAAGTACCAATTCTGAGTAATGTTCTCGGTGCTGACCACAACCGCGTAAGTGGTCCTGTGAACCTGAAGCATGTCTTTGGCGAGATCAATGGCGATGACACCCGCACTGCAACCCATGCCACCCAAGTTGAAGCTCCTAATATTANTTCTCAGCTTGTACCTGTTGACTATCATAGCAGAAAGCGAAGGAGTTGGATTGAAGAGGCTGCAGTTAACNACAAGGATCCCAATGTCGTCTGGCTTGACGTTTGTGTTGTTGGCAAAGAGGTTGTCGAGGACACCAAACATAACCTGTACCGGGAAAAACTCAAGTCCCACGTCAATTAGAGATAAGGTTTAAAATAAAATTTAGTATACAAAGCAGGACACTTTAGAAGTTGATTTTATAGGGATGAGTTAGGCNTAAGAATCAAGAACCTGTTCGGCCTCTTGTCTTGCGGCGGCCATCGAAGGAGTTGGAGGGATGGAATGCATGGCTTCGGGGACGTAGGTGTCTTCGCCGAGGCCAGAGCGTTCCAAGATCCTTCGCTGGAACTCGAGGGAGGGGTCGTTGAAGTCACCCGTGAGCCTCGAATGTTCCATGAACTGGTGGAACTGCACGCGGAGATGGTGAGGGGGTCTATAGCAAGAGTAATCCACCAGGTACACGGGTCTCGGACGGGTCATTATGTAGAGGGTGAGTCCCAAAACGAGAACGGTGGAAAAGATGATGAAGGTGATGGGGTTGTGCTGGAGCCAGAGGTAGTGAATGTGAATGTCATGAGGTGATNAGAGGATGGAGATGAGAGGAACCAAGCATAGGGTCCACAAGTGTGTGATCAGGTANTGGTAGCCCAGTTTCACGTACTTGAGCTTTACACTATTGGTGTTGGAGGTGGTGGTGGTGGCAGGGGAGGAACTCATTGTGGATTGGATTGAAAAATGGAGAATTTGGGTTGCAAAATGGTACGGAATGAATGAATGAATGAATGAATGAATGAATGGTGTGATTATATAGTGGGGTGGGGAGTGGAAATGTGGATTAGATGGCTTATGAGGGGCTCTGGGGTTGGGTTTGATACAACTGCAACAACGGCCACAACAGAGGGGGATAAAAAAAAAGAGGAACACGTAGCACGGTGTTTTGGTGGGGGATGATGCCAACCACAACGAGGACAGGAATTGAAGCAACTAACAAGGAAAGTTTGGGTTTTGGGAATGCAATGGAAAGGCAGAAAGGAAATATTTATAGGAGAGATGGGTGACGCCGTGACGGTCAAAGGCAGAGAAGTGGCGAGCGCAGGCTTCAATGTTGCTTCTTTCACTCTCTTGACTTTTGTGATATTAGTAATTANTCACTCAATGTGATTATCTGTTCTAGTGTTTGTTTCTTATATATCTTAACAGTGGGAAAATTCATTTTAGATTGTATTTTTTACATAAAAAAAGGTGATTCTGTGCATGAGGCTCCCATGATGTAGGCATAGGGAGGGTAGATGTATACAGTATTATCCGTCCGTTGAGGCTTTAGATTTGAAATTTTAATCAAACATCTTTTTTAATTGGAGGTTCTAAATTGTCTTTCCACCTCCCGGCCAGCCGCAATAGCCTTGTTGTACATCAAGTTGAAGATCAGTCAATTGTGCAACTAACAGTCT

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00078	158829	164378	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

molecular_function

GO:0000166 nucleotide binding

GO:0003676 nucleic acid binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000078s00005394.1	PF00076.17	RRM_1	11	80	1.30E-23

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	54.727
SRR1783600	control	56.682
SRR1783602	moderate drought stress	85.414
SRR1811619	moderate drought stress	84.399

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	117.662
DRR006520	Root Summer glycyrrhizin high producing strain	116.287
DRR006521	Root Winter glycyrrhizin high producing strain	173.097
DRR006522	Root Winter glycyrrhizin high producing strain	171.438
DRR006523	Root Summer glycyrrhizin low producing strain	355.445
DRR006524	Root Summer glycyrrhizin low producing strain	358.810
DRR006525	Leaf Summer glycyrrhizin high producing strain	68.556
DRR006526	Leaf Summer glycyrrhizin high producing strain	69.302

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	66.321
SRR2868004	Drought Stress (root)	52.591
SRR2967015	Control (root)	100.086

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	27.078
SRR9715740	Leaf	26.060
SRR9715741	Leaf	22.477
SRR9715739	Root	26.769
SRR9715742	Root	42.814
SRR9715743	Root	33.278

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	27.753
SRR8749028	MeJA induced 9h	32.259
SRR8749029	MeJA induced 9h	41.440
SRR8749030	Uninduced	28.686
SRR8749031	Uninduced	24.947
SRR8749032	Uninduced	37.908

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	38.320
SRR8400027	Control - Root	44.487