Gene detail

Gene detail information of Glyur000078s00005392

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT2G16250.1	0	Leucine-rich repeat protein kinase family protein
NR	XP_003523518.1	0	PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At2g16250-like [Glycine max]
COG	YP_004775215.1	5.00E-35	RHS repeat-associated core domain-containing protein [Cyclobacterium marinum DSM 745]
Swissprot	tr\|C0LGK4\|Y2165_ARATH	0	Probable LRR receptor-like serine/threonine-protein kinase At2g16250 (Precursor)
trEMBL	tr\|K7KHJ8\|K7KHJ8_SOYBN	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA04G01430.2}

Sequence

Transcript Sequence

>Glyur000078s00005392.1
ATGGCTGATCGGCGAGGCATAGTGTGGTTTGTGCTGTTGTTGTTCTTCGTGCTGTTTGAGGTGACATTGGAGCAGTTAGAGCCACTGGGTTCAGGAACCGAGCGAGAAGCACTTCTCGAATTAAGGGCTTCTTTGGGGTTAAGAAGCAAGGAATGGCCAAGAAAGCCAGACCCATGCTTAATCTGGGTTGGAATCACATGCCAGGATGGTCGTGTTGTTGGGATCAACATCTCTGGCTTCAGAAGAACCCGACTTGGGAGGAGAAACCCACAATTTGCTGTTGATGCCTTGGCCAATTTCACCCTCTTGCAGTCATTCAATGCCTCCAATTTCCTCCTTCCTGGCCCTATTCCTGATTGGTTTGGTCTCAGCCTCACTTCACTTCGTGTGCTTGATCTTCGTTCTTGCTCCATTGTCAATGCTATCCCTTCAACTCTTGGNAATTTGACCAACCTAACTAGTCTCTATCTTTCTGATAACAATCTCACTGGCTCAGTTCCTGATAGTTTGGGNCAACTCTTGGCACTCTCGGTTCTTGATCTCTCTGGGAACTCTNTTACTGGCACCATACCAGCATCCTTTGCATTTCTTGCAAATCTTTCTTCCCTTGACATGTCTGCCAATTTTTTGTCAGGGTCTATTCCCCAAGGTATAGGAAACCTCTCCAGGTTGCAATACTTGAACCTTTCTGGCAATGACCTGACTTCTTTGCCTTCCCAATTGGGGGGTCTTACTAGCTTAGTTGACCTTGATCTTAGTGAGAATTCTTTATCTGGTGGAGTTCCTTCGGATTTCAAGCGGTTGAGGAACTTGCGGCGTGTGGTGCTTGCGAACAGCATGCTCAATGGACCTTTGCCGGCGGACTTGTTTACTGCTTCATCGAAGCAGTTGCAGATCATAGTGCTGAGACAAAACAATTTTACNGGTTCTTTACCCGTTGAGTTGTGGTCTCTGCCAAGATTGACCCTCCTTGATGTGTCTTCCAATGGCTTCAGTGGTATGCTTCCGAATTCTAGTTCCGCTGCTAATGCTACTGTTGCGGTGCTCAATGTTTCTCATAATATGTTTTATGGAGGCCTCACACCTGTGCTCAGAAGGTTCGGTTTTGTCAATCTTGCAAACAATTATTTTGAGGGCAAGGTTCTGGATTCCATGCTTAATGTATCTCTGGATAGTAACTGCCTCCAAAACNCGACAAATCAGAAGACAACGGAGGAATGTGCATCGTTTTATGCAGAGAGGGGCCTAAGTTTTGATAATTTCGGACGCCCGAATACGACAAAACCTCCCGCCACAGAAGGCTCTGGGATGAGTAATAAAACTAAGATTATATTGGCAGGAGTCTTGGGTGGACTGGGTTTAATTGCGCTTTTGGTGTTGCTGCTGGTACTGTTGCTTCTGTGCGCTCGGAAGAGGGGTAACTCAAATCAAAGGGGAAACGGTGTGGGCCCTGCTCCTGCTGGAGGCAGTCCTCAACATCCTGGTGTATCAGTAAACTTTTCAAGTGTAGGAGACTCGTTTACATATCATCAGCTGCTTCAGGCAACAGGAGATTTCAATGATGCAAATCTTATCAAACATGGCCACACTGGGGATTTCTTCAAAGGTGTTCTGGAAAATGGGGTTCCTATTGTCATCAAAAGGATCGACGCGCGGTCAACTAAAAAGGATGCTTACCTAATGGAATTGGACTTTTTCAATAAGGTTTCTCATCAAAGATTTGTTCCCTTATTAGGTCATTGCTTAGAAAATGAGAATGAGAAGTTCCTGGTTTATAAACATTTGCCAAATGGGGACTTGTCTAATTGCTTATTCTACAAAAACACTACATCTGAAGATGGTGCTCTGCAGTCATTGGACTGGATAACTAGGTTGAAAATTGCTACTGGAGCAGCAGAGGCCCTAACATATCTGCATCATGAATGTATNCCACCCATTGTCCACAGAGACATTCAAGCGAGCAGTATACTTCTAGATGATAAATATGAAGTTCGGTTAGGGAGTCTAAGTGAAGCCTGTGCTCAAGAAGGTGATACTCATCAAAGTCCATCAACATCAGTTTGTGCCTATGACGTTTATTGCTTTGGGAAAGTGTTACTTGAGCTGGTCACCGGTAAGCTGGGAATTAGTNCATGCAGTGAGGGTGAAGTGAAGGATTGGCTTGATCAGATTCTACCTTGCATTAGTATGTATGACAAGGAGCTTGTGACAAAAATTGTTGATCCGACAATGGTTGTNGATGAAGATTTCTTAGAGGAAGTATGGGCAATAGCCATTGTCGCCAGGTCTTGCTTAAATCCCAAACCTTCAAGAAGACCCCCAATGAGATATGTTCTCAAGGCTTTGGAAAACCCTTTAAAAGTCGTAAGGGAAGAAAATTCCAGTTCTGCGCGGCTCAAAGCAACCTCTTCTAGAGGCTCTTGGAATGCAACCNTGTTTGGTAGTTGGCGGCAGAGTTCATCCGATGTAACAGCAATCCCGGCAGCCTCTGGTACAAAATTAGAAGGAGCTAGTAGTTTAAAGCTTTCAGAAACGACCNGCTCGCAGTCGCAGGGTAGCTTCCACAATGGCAGGGGTGATATTTCGTCATCTCGGAGACGTCATTCGAAGGACATATTCCCAGAGCCATCTGGCATACATGATGTGGAGAGGCTTGAGCAGGAATAG

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00078	139469	143976	-

Gene family

Gene family	subfamily
Protein Kinases Family	PPC:1.15.3

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0006468 protein phosphorylation

molecular_function

GO:0004672 protein kinase activity

GO:0005515 protein binding

GO:0005524 ATP binding

GO:0016772 transferase activity, transferring phosphorus-containing groups

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000078s00005392.1	PF13855.1	LRR_8	126	185	4.90E-10
Glyur000078s00005392.1	PF13855.1	LRR_8	222	281	5.80E-10
Glyur000078s00005392.1	PF07714.12	Pkinase_Tyr	525	673	1.80E-15

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	2.926
SRR1783600	control	2.969
SRR1783602	moderate drought stress	3.394
SRR1811619	moderate drought stress	3.441

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	2.764
DRR006520	Root Summer glycyrrhizin high producing strain	2.604
DRR006521	Root Winter glycyrrhizin high producing strain	2.516
DRR006522	Root Winter glycyrrhizin high producing strain	2.579
DRR006523	Root Summer glycyrrhizin low producing strain	3.460
DRR006524	Root Summer glycyrrhizin low producing strain	3.410
DRR006525	Leaf Summer glycyrrhizin high producing strain	1.460
DRR006526	Leaf Summer glycyrrhizin high producing strain	1.421

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	9.747
SRR2868004	Drought Stress (root)	9.701
SRR2967015	Control (root)	10.110

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	1.587
SRR9715740	Leaf	2.192
SRR9715741	Leaf	1.821
SRR9715739	Root	3.080
SRR9715742	Root	4.787
SRR9715743	Root	4.352

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	7.840
SRR8749028	MeJA induced 9h	5.777
SRR8749029	MeJA induced 9h	3.013
SRR8749030	Uninduced	4.231
SRR8749031	Uninduced	1.910
SRR8749032	Uninduced	2.228

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	7.585
SRR8400027	Control - Root	7.044