Gene detail

Gene detail information of Glyur000078s00005388

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT4G34480.1	1.00E-178	O-Glycosyl hydrolases family 17 protein
NR	XP_003603912.1	0	Glucan endo-1,3-beta-glucosidase [Medicago truncatula]
Swissprot	tr\|Q9M069\|E137_ARATH	0	Glucan endo-1,3-beta-glucosidase 7 (Precursor)
trEMBL	tr\|G7J6K5\|G7J6K5_MEDTR	0	Glucan endo-1,3-beta-glucosidase-like protein {ECO:0000313\|EMBL:AES74163.1}

Sequence

Transcript Sequence

>Glyur000078s00005388.1
TAGAGCAGCATCTACTAACTTCAGTGTTGGAATCACCACACTCAAAAAGATTTCTTGTTAGTGGAAAAAGACATGGCCACACCNTCACAGCCTTCAATCCTTCTCTCCCTTTCTCTATTCGCCATTGCTCTCTGCTTTGCGGAGTCGCAGTCCTTCATTGGCGTAAACTACGGCCAGGTCGCCGACAACCTTCCTCCGCCGGAGGCCACGGCGAGGCTCCTCCAATCAACCACCATCGGAAAAGTCCGTCTCTACGGCGCCGATCCCGGGATCATCAAAGCCCTGGCCAATTCCGGCGTCGGAATCGTCGTCGGCGCCGCGAACGGCGACATTCCGAGCNTGGCCTCCGATCCCAACGCGGCGACTCAGTGGGTGAACGNGAACGTGTTGCCGTACTACCCGGCCAGCAACATTACCCTCATCACCGTCGGTAACGAGGTGTTGACCTCCGGCGACCAAGGCCTCGTGTCGCAGCTCGTGCCTGCGATTCGAAATGTCCAGAGTGCCCTCAGCTCTGCCTCACTCGGCGGCAAGGTCAGGGTCTCCACCGTACACTCCATGGCCGTGTTGACTCAGTCGGATCCACCTTCGTCCGGGTTGTTCAACCCGGCGCTCCAAGACACACTAAAACAGTTGCTGGCGTTTCTGAAGGATAATAAATCGCCGTTTGCCATCAATCCCTACCCGATCTTCGCTTACCAGACCGACCCGAGGCCCGAAACGCTCGCATTCTGCCTCTTCCAGCCCAACTCGGGNCGGGTCGACTCGGGTAACGGCAAGCTTTACACCAACATGTTCGATGCTCAGGTTGATGCGGTGCATTCTGCCCTGAGTGGTATGGGATTTCAGGACATTGAGATTGTGGTTGCTGAGACAGGATGGCCCTCTCGTGGGGACAGCAATGAAGTGGGACCAAGTGTTGAAAATGCCAAGGCCTATAATGGGAACCTGATTAATCACCTTAGATCATTGGTTGGGACCCCTTTGATGCCTGGGAAGTCCGTGGACACATACATTTTTGCGCTCTACGACGAGGACCTGAAACCCGGCCCAGGATCCGAACGCGCCTTTGGGCTGTTCAAAACTGATCTCACCATGTNTTATGATGTTGGCTTAGCCAAGTCTAGCCAGCAGACTCCTCCATCAACTAGTCCAGTTACTCCAGCACCTAGCACTGCAGTTGGATGGTGTGTTCCAAAAGCAGGAGCCTCTGATGCTCAGTTGCAGGCCAATATTGACTATGCCTGTAGCCAAGGCATAGACTGTGGGCCAATACAACCAGGAGGTGCTTGTTTTGAACCTAACACGGTGGCATCCCATGCTGCCTTTGCAATGAATCTCTACTACCAGACGTTTGGTAGAAATCAATGGAACTGTGATTTCTCTCAATCAGCAATCCTGACATCCCAAAATCCAAGTTATAATGCTTGCATTTACACTGGTGGGAGTACCTGAAAAAGCAGATGCTTCAGCTTGTCGTCNTATAATAAATTTTGTGGATAGAAGAAGTGTTTTAGGATTTAAAATTAAATTAATGAATAAGGGTTCATCCTCAGCCCTATTTTATTTATAGCTTCTAATTTTATAATATGGCTTTAATTGTAAAGGCATGCCAATTGTGTAAAATACACACTTCTTAGTGTGGGGGGATCCACAATTCTGTTTCCTTTAATTCTATTATGATCCCACCCTATCCCATTTTTTTCAATATCATGTACTCTTTCGGGCTTATCACTCCAAATGTGATTATGCTGGGGGTGTAT

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00078	119707	123440	-

Gene family

Gene family	subfamily
Carbohydrate-Active enzymes Family	GH17

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0005975 carbohydrate metabolic process

molecular_function
GO:0004553 hydrolase activity, hydrolyzing O-glycosyl compounds

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000078s00005388.1	PF00332.13	Glyco_hydro_17	29	346	3.50E-88
Glyur000078s00005388.1	PF07983.8	X8	372	441	1.40E-17

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	232.682
SRR1783600	control	233.175
SRR1783602	moderate drought stress	208.756
SRR1811619	moderate drought stress	207.063

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	89.521
DRR006520	Root Summer glycyrrhizin high producing strain	88.582
DRR006521	Root Winter glycyrrhizin high producing strain	16.799
DRR006522	Root Winter glycyrrhizin high producing strain	16.095
DRR006523	Root Summer glycyrrhizin low producing strain	129.025
DRR006524	Root Summer glycyrrhizin low producing strain	128.447
DRR006525	Leaf Summer glycyrrhizin high producing strain	67.210
DRR006526	Leaf Summer glycyrrhizin high producing strain	66.955

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	46.805
SRR2868004	Drought Stress (root)	33.389
SRR2967015	Control (root)	28.712

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	133.275
SRR9715740	Leaf	39.650
SRR9715741	Leaf	96.532
SRR9715739	Root	359.822
SRR9715742	Root	370.989
SRR9715743	Root	358.165

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	82.801
SRR8749028	MeJA induced 9h	67.927
SRR8749029	MeJA induced 9h	92.929
SRR8749030	Uninduced	34.971
SRR8749031	Uninduced	28.627
SRR8749032	Uninduced	26.607

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	118.010
SRR8400027	Control - Root	230.087