Gene detail

Gene detail information of Glyur000078s00005368

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT3G18830.1	0	polyol/monosaccharide transporter 5
NR	XP_011100123.1	0	PREDICTED: uncharacterized protein LOC105178355 [Sesamum indicum]
COG	YP_003405196.1	2.00E-84	sugar transporter [Haloterrigena turkmenica DSM 5511]
Swissprot	tr\|Q8VZ80\|PLT5_ARATH	0	Polyol transporter 5
trEMBL	tr\|G7J6H8\|G7J6H8_MEDTR	0	Polyol/monosaccharide transporter 1 {ECO:0000313\|EMBL:AES74137.1}

Sequence

Transcript Sequence

>Glyur000078s00005368.1
ATGGCCGAAGCAGCAGCAGCAGCAGCTCCTCAGAAATCTCTTAAGGATTTCGATCCTCCAATGAAACCCAAAAGGAATAAGTTTGCTTTCGCATGTGCTATATTGGCTTCCATGACTTCCATTTTACTCGGTTACGATATTGGGGTGATGAGTGGAGCNGTCATATACATAAAGCGAGACTTGAAACTGACGGACGTGCAAATCGAGATCCTGATAGGCATCATCAACCTTTACTCCCTCGTCGGCTCATGCCTCGCCGGCAGAACCTCCGACTGGATAGGCCGCCGCTACACCATTGTCCTTGCCGGAGGCATCTTCTTCACCGGCGCCATCCTCATGGGACTCTCACCCAACTACCCCTTCCTCATGTTCGCCCGCTTCATCGCTGGTATCGGCATCGGCTACGCCCTCATGATCGCCCCTGTCTACACCGCTGAGGTATTCATCAATGGAGGGATATTGCTTGGATACATTTCAAACTACACGTTTTCGAAGCTGTCACTTCGATTGGGGTGGAGGGTGATGCTAGGAATCGGGGCNATTCCTTCGGTCATCTTAGCAGTGGGAGTGTTGGCGATGCCGGAGTCACCCCGTTGGCTCGTCATGAGGGGTAGGCTCGGGGATGCCATCANGGTCCTCAACANGACCTCCGATTCNGAGGAAGAGGCTCTTATGAGGCTCGCCGAAATCAAAGCTGCGGCTGGAATCCCCGAGTCTTGCAACGACGACGTCNTTCGGGTAACTAATACGCAAAGCCACGGGGGAGGCGTGTGGAAAGAGCTNTTTCTTTATCCTACACCCGCGGTGCGCCACATCGTGATTGCGGCTCTTGGGATTCACTTCTTCCAACAGGCATCAGGCATAGATGCTGTCGTTTTGTACAGCCCCACCATCTTCCAAAAGGCCGGGCTCGAATCAGATACAGAGCAGCTCCTTGCAACCGTTGCTGTTGGATTCTCCAAAACTGTTTTCATTCTTGTGGCCACTTTTCTTTTGGATCGGGTCGGGCGTCGCCCGTTGCTGTTGTCCAGCGTGGCAGGCATGGTGATCTCGCTTCTCACTCTCGCTGTGAGCCTCACGTTCATCGATCATTCGCACGTAAGGATCACGTGGGCCATTGGGCTTAGTATTGCCACCGTGTTGTCCTACGTGGCAACTTTCTCCATCGGGGCAGGTCCCATCACGTGGGTCTATAGCTCTGAGATATTCCCGTTGAGGCTACGCGCTCAGGGTGCATCTGTTGGGGTGGTGGTGAATAGGGTGACCAGTGGGGTCATCTCGATGACCTTCTTGTCCCTCTCTAACAAGATCACCATTGGAGGGGCATTCTTCCTCTTCGGTGGAATTGCCCTTTGTGGGTGGATCTTCTTCTACACCATGCTCCCCGAAACACAGGGTAAGACCCTTGAGGAAATGGAAGGGTCTTTTGGTAAATTCAGAGCNAAGTCCAACACCACCAAGGGTAAGGATAAAATCATGGGCGCCGAGGAAGGAGCAGCAGCTCAGAAATCTCTTCAGGATTTCGATCCTCCAATGAAACCCAAAAGGAATAAGTTTGCTTTCGCCTGTGCTATATTGGCTTCCATGACTTCCATTTTACTCGGTTACGATATTGGGGTGATGAGTGGAGCGATCATATACATAAAACGAGACCTGAAACTGACGGACGTGCAGATCGAGATCCTGGCAGGCATCATCAACCTTTACTCCCTCGTAGGCTCAACTGTCGCCGGCAGAACCTCCGACTGGATAGGACGCCGCTACACCATCGTCCTCGCCGGAGCCATCTTCTTCGCCGGATCCATCCTCATGGGATTCTCTCCCAATTACTCCTTCCTCATGTTTGCTCGCTTCGTCGCCGGTATCGGCATCGGCTATGCCCTCATGATCGCCCCTGTCTACACCGCCGAAGTCTCTCCTGCCTCCTCTCGCGGCTTCCTCACCTCCTTCCCTGAGGTATTCATCAATGGAGGGATATTGCTTGGATACATTTCAAACTACGCGTTTTCGAAGCTGCCACTTCGGTTGGGGTGGAGGGTGATGTTAGGAATTGGGGCGATTCCTTCGGTCATCTTAGCGGTGGGAGTGTTGGCGATGCCGGAGTCACCCCGTTGGCTCGTNATGAGGGGTAGGCTCGGGGATGCCATCAAAGTCCTCAATAGGACCTCTGATTCAGAGGAAGAGGCTCTAATGAGGCTCGCCGAAATCAAAGCTGCGGCTGGTATCCCCGAGTCTTGCAANGACGACGTCGTTCAGGTAACCAATAAGCAAAGCCACGGGGAAGGCGTGTGGAAAGAGTTGTTTCTTTATCCTACACCCACAGTGCGCCACATCGTGATTGCAGCTCTCGGGCTTCACTTCTTCCAACAGTCATCTGGCATAGACGCCGTCGTTTTGTACAGCCCCACTATCTTCCAAAAGGCCGGGCTCAAATCAGATACAGATCAACTCCTTGCAACCATTGCCGTTGGAGTCGCCAAGACCTTTTCCATCCTTGTGGCCACTTTTCTGTTGGACCGGCTCGGGCGTCGCCCGTTGCTGTTGTCCAGCTCGGGAGGCATGGTGGTTTCGCTTCTCATTCTCGGGANGAGCCTCACGCTCATTGATCACTCGCACACGAGGCTCACGTGGGCCATTGGACTGAGTATTGCAACTGTGTTGTCCTTCGTGGCATCGTTCTCCATTGGGGCGGGTCCCATCGCGTGGGTCTATAGCTCCGAGATCTTCCCGTTGAGGCTACGCGCTCAAGGTGCGTCTGCAGGGGTGGTAGTGAATAGGGTGATGAGTGGGGTCATCTCGATGACCTTCTTGTCCCTCTCTAACAAGATCACCATTGGAGGGGCATTCTTCCTCTTCGCTGGAGTTGCAACTTGTGGGTGGATCTTCTTCTATACCATGCTCCCCGAGACACAAGGTAAGACCCTTGAGGAAATGGAAGGGTCTTTTGGTAAATTCGGATGGATGTCCAACCCCACCAAGGGTAAGGGTGTTATGGACAATGACAATGGCGATATCCAATTGGCCAAGTAG

Protein Sequence

>Glyur000078s00005368.1
MAEAAAAAAPQKSLKDFDPPMKPKRNKFAFACAILASMTSILLGYDIGVMSGAVIYIKRDLKLTDVQIEILIGIINLYSLVGSCLAGRTSDWIGRRYTIVLAGGIFFTGAILMGLSPNYPFLMFARFIAGIGIGYALMIAPVYTAEVFINGGILLGYISNYTFSKLSLRLGWRVMLGIGAIPSVILAVGVLAMPESPRWLVMRGRLGDAIXVLNXTSDSEEEALMRLAEIKAAAGIPESCNDDVXRVTNTQSHGGGVWKELFLYPTPAVRHIVIAALGIHFFQQASGIDAVVLYSPTIFQKAGLESDTEQLLATVAVGFSKTVFILVATFLLDRVGRRPLLLSSVAGMVISLLTLAVSLTFIDHSHVRITWAIGLSIATVLSYVATFSIGAGPITWVYSSEIFPLRLRAQGASVGVVVNRVTSGVISMTFLSLSNKITIGGAFFLFGGIALCGWIFFYTMLPETQGKTLEEMEGSFGKFRAKSNTTKGKDKIMGAEEGAAAQKSLQDFDPPMKPKRNKFAFACAILASMTSILLGYDIGVMSGAIIYIKRDLKLTDVQIEILAGIINLYSLVGSTVAGRTSDWIGRRYTIVLAGAIFFAGSILMGFSPNYSFLMFARFVAGIGIGYALMIAPVYTAEVSPASSRGFLTSFPEVFINGGILLGYISNYAFSKLPLRLGWRVMLGIGAIPSVILAVGVLAMPESPRWLVMRGRLGDAIKVLNRTSDSEEEALMRLAEIKAAAGIPESCXDDVVQVTNKQSHGEGVWKELFLYPTPTVRHIVIAALGLHFFQQSSGIDAVVLYSPTIFQKAGLKSDTDQLLATIAVGVAKTFSILVATFLLDRLGRRPLLLSSSGGMVVSLLILGXSLTLIDHSHTRLTWAIGLSIATVLSFVASFSIGAGPIAWVYSSEIFPLRLRAQGASAGVVVNRVMSGVISMTFLSLSNKITIGGAFFLFAGVATCGWIFFYTMLPETQGKTLEEMEGSFGKFGWMSNPTKGKGVMDNDNGDIQLAK

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00078	25688	33344	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0055085 transmembrane transport

cellular_component

GO:0016020 membrane

GO:0016021 integral component of membrane

molecular_function

GO:0005215 transporter activity

GO:0022857 transmembrane transporter activity

GO:0022891 substrate-specific transmembrane transporter activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000078s00005368.1	PF00083.19	Sugar_tr	32	474	5.10E-88
Glyur000078s00005368.1	PF00083.19	Sugar_tr	523	980	7.80E-104

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	0.587
SRR1783600	control	0.619
SRR1783602	moderate drought stress	0.708
SRR1811619	moderate drought stress	0.674

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	0.251
DRR006520	Root Summer glycyrrhizin high producing strain	0.186
DRR006521	Root Winter glycyrrhizin high producing strain	0.021
DRR006522	Root Winter glycyrrhizin high producing strain	0.000
DRR006523	Root Summer glycyrrhizin low producing strain	0.347
DRR006524	Root Summer glycyrrhizin low producing strain	0.404
DRR006525	Leaf Summer glycyrrhizin high producing strain	1.219
DRR006526	Leaf Summer glycyrrhizin high producing strain	1.355

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	1.000
SRR2868004	Drought Stress (root)	2.124
SRR2967015	Control (root)	2.582

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	6.840
SRR9715740	Leaf	3.614
SRR9715741	Leaf	4.958
SRR9715739	Root	1.293
SRR9715742	Root	1.107
SRR9715743	Root	1.315

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.247
SRR8749028	MeJA induced 9h	0.214
SRR8749029	MeJA induced 9h	0.296
SRR8749030	Uninduced	0.147
SRR8749031	Uninduced	0.118
SRR8749032	Uninduced	0.313

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	0.705
SRR8400027	Control - Root	0.718