Gene detail

Gene detail information of Glyur000078s00005363.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT1G76510.2	2.00E-118	ARID/BRIGHT DNA-binding domain-containing protein
NR	XP_007135987.1	0	hypothetical protein PHAVU_009G008800g [Phaseolus vulgaris]
Swissprot	tr\|Q0WNR6\|ARID5_ARATH	1.00E-145	AT-rich interactive domain-containing protein 5
trEMBL	tr\|V7AQP7\|V7AQP7_PHAVU	0	Uncharacterized protein {ECO:0000313\|EMBL:ESW07982.1}

Sequence

Transcript Sequence

>Glyur000078s00005363.1
CAGGGGTAATTAATAAGTACTAGTTCAATTGGTAGAACACCCAAATTTGAATCCCCCTAAAAGCACAATGCAGGGGTAAGATGGTCATTTGACATGAAAAAGGATCATGAGAGAGGGGGTAGTGGAAACCTGGAAGTGGAAGGGGAGGGGGTGCGTGCCGTTTGTTAAGAGAAAGTCTTGGGTGAGCACAAACCTAACAGCTTATCTTTACACACACCCAATAAAAACATGACACCTAATAATACAAAAATATGAAAAACCAAAAAATAAAAAAATGCCAGAAATACGATTCAGATCCTTCCGTATTCCCTGTTTNCCCTTTTTCACCACTGCAGCTCCATGGTTTCTATCTCCATGGGTTTCTATATCCTGCAGATTATCGTTGCCATTTTCACTGAAGAGCAACACGATACTTGATAAAATAAAAATAGAATGAAACTATTGCTGCACATTCACATAGTGGCACGAGCAGAGCGGCGCCTAGCATGAAACTAGCTCAGCAGTGGCCGGAAGAATGAAGGGCGGCGCGATTTGGCCGTACTCAGTGCTGGAATGGAACCGTCGCCGCTTGACTGTGAGGGGACCGCCAGTGCCATGGTTGTTTGGCTATGGGATTTAGGGGAATGTTTTTTGGTCGGTGCAGAATCCGAGAAGATGACGGCGGAGGGATGGCGGACTTCGTCTAGGCACCACGATGGTATGGTGGGCCTAACCGTACGATGACGACAACGGAGGAAGCTGGACTAGATACTGGTGAATCGAACCGTGGTGAGGTCCTGGTTGCGCTCTTGGTGGTCCGAGGCGGCTGAAACGGCAACCGTGGTCTGTAGCCATGGAGATAGAAACCATGGAAAAGACGACAATGGTGAAAACAAAGGAGGAGGCCGTGTGTTTCTGACTTTTTTTATTTTTTGGATTTTCCTATTTTTGTTTTATTATGTGTTTTGTTTTTATTGGGTGTGTGTAAAGATGAGGTGTTAGGTTTGTGCTCACCCAAGACTTTCTCGTTTGTTAATTCGAGTCCCAAACTAGCCTCGTCGCATGGGTGGGGTGAGGTGACATAAGCCAGCGTATTCAGTATTCACGATATGGCGTTTCATTTCGATGACAGTAATAACTANAAGCAGAGTAGAGTGTTTGTGCTTCTTCGTTCATTCTAATTCCCCGATTCATTTATTTATATTCCAAATAAAAATACACACTCCTCTACTCTATTTCCAGTTCACCATCTGCAATTTTTGCTCTGTGAATCCCGAAAACCCTACATTCGCGGCAATTGACCAGTTTCCCTCTTCATCGTCAATTAAGTAATTACATGGTCGTGGAGTGTAGGATAAGCATAACTGCATAAAGNGTAAGATAGTGAGATGGAGGGTGGTGTGAGACCGGGGGATGATAACTCCCAGTCCCATGGCAATTCCGATATGGATCTTGTTGATGCTACTTTGCAATACGAACACTCAGATAAGAATCAAAACGCGGGTGTAGGTTCGGGTTCCCTTCCTCAGAATTCCCAGACTCAGCTACAACAGGATCAAGTAATGGTGGATCAGGGTGATGATACCAAAAATGTCGATTCTACTCCCAGTCACATGCTAGAAACCACAACAATTACTGAGAATCAGCTTCAACTTGAAGAAGCTAAAACCCTTGTGCATCAGGAATTGATCACTCCAAAGCTTAAAGAAAAGAATGTCAGAGAAATGAAGAACGTGCTAAACGATACCGAGATGACTGATTATGATGAGGCTGGTACGTGTCTGGAACGAGAAGCATTCATGAAAGAGCTCGAGAGTTTCTACAGAGAGAGGTCCCTGGAATTCAAGCCTCCCAAGTTTTACGGAGAGCCACTGAATTGCCTCAAGTTATGGAGAGCTGTTATCAGACTAGGCGGCTACGACGTGGTAACTTCATCTAAGTTGTGGCGGCAAGTAGGAGAATCTTTCCACCCCCCTAAGACTTGCACTACAGTCTCATGGACGTTTAGAATCTTTTATGAGAAGGCACTTTTAGAGTATGAAAAGCATAAGAGAGAGATTGGGGAGCTACAGCTCCCTGTTGGATCATTCCATCAATCTTCAAGTGTGGAAAAAGAGACTGCTGTTTATCAGGCTCCAGGCTCAGGAAGGGCACGAAGGGATGCGGCAGCACGTGCAATGCAAGGTTGGCATGCTCAGCGCCTTCTTGGATATGGTGAGGTTGCTGAGCCAGTTACTAAGGACAAGAACTTCAGTCCCACAACAAAGCGTGAAAAGAATCTCAAAAGTATTGGTGTGATTAATAAACAGAGGACACCATCTGGCATGGAGCAAGCTGACAAAGCTGCAAGTATAGAAGGAGATAGACAATTGGTCACGGCAGTAGTGGACATTGGACCCCCAGCTGACTGGGTGAAGATCAATGTGCGGGAAACTAAAGACTGTTTTGAAGTGTATGCACTAGTTCCTGGGCTCCTTCGTGAGGAGGTGCGAGTCCAATCAGATCCAGTTGGCCGTCTTGTTATAACTGGTCTGCCGGAACAGGTTGTGAACTTGCCTGCAAGAATTGATCCGCTTCAGACATCTGCAGTTGTTAGTTTGCATGGTCGACTATTTGTACGCGTTCCTTTTGAGCAGGGAGCCGTTTGAATTTTCCTCCCTTGAATGGTTGGTTCCTCAAATTTCCTCAGGAGGAGTCAAAGTTTTTTGAACAACAAAGGCATGGTTATGCTAGGAACTAGTCTAGCCCTGTTGGATTAGTTAAAACTAGTATACCCAACTATATTATTGTTCATTTTTCTCTTTAGGTAACATACCCAATTCACTAATTTAATATGCTGGATTTTTCCGTGTTAAATTCCTCTTTTACCTTTATACCAAAGAAATCGATTTTTACCTTTTTAGTTTTTATACTTCTCTGCTGGCGCGCATCATTAGGAAGGAAACGTGCGATTAGTTAGAGGACTGCTTTGGAAC

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00078	7014	14052	-

Gene family

Gene family	subfamily
Transcription Factors Family	ARID

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

molecular_function
GO:0003677 DNA binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000078s00005363.1	PF01388.16	ARID	133	218	7.20E-20

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	8.885
SRR1783600	control	8.789
SRR1783602	moderate drought stress	8.250
SRR1811619	moderate drought stress	8.277

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	8.374
DRR006520	Root Summer glycyrrhizin high producing strain	8.180
DRR006521	Root Winter glycyrrhizin high producing strain	13.576
DRR006522	Root Winter glycyrrhizin high producing strain	13.110
DRR006523	Root Summer glycyrrhizin low producing strain	9.074
DRR006524	Root Summer glycyrrhizin low producing strain	9.034
DRR006525	Leaf Summer glycyrrhizin high producing strain	6.843
DRR006526	Leaf Summer glycyrrhizin high producing strain	6.741

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	14.175
SRR2868004	Drought Stress (root)	12.875
SRR2967015	Control (root)	12.549

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	10.813
SRR9715740	Leaf	9.814
SRR9715741	Leaf	10.386
SRR9715739	Root	2.667
SRR9715742	Root	6.733
SRR9715743	Root	5.368

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	22.235
SRR8749028	MeJA induced 9h	15.091
SRR8749029	MeJA induced 9h	15.035
SRR8749030	Uninduced	7.893
SRR8749031	Uninduced	5.414
SRR8749032	Uninduced	7.950

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	14.220
SRR8400027	Control - Root	13.403