Gene detail information of Glyur000078s00005359 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT1G76500.1 | 9.00E-35 | Predicted AT-hook DNA-binding family protein |
| NR | XP_003527629.1 | 1.15E-71 | PREDICTED: putative DNA-binding protein ESCAROLA-like [Glycine max] |
| Swissprot | tr|Q9S7C9|ESCA_ARATH | 2.00E-49 | Putative DNA-binding protein ESCAROLA |
| trEMBL | tr|K7KSH6|K7KSH6_SOYBN | 3.00E-71 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA06G01650.2} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00078 | 1220 | 3006 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000078s00005359.1 | PF03479.10 | DUF296 | 150 | 261 | 2.40E-35 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 4.478 |
| SRR1783600 | control | 4.624 |
| SRR1783602 | moderate drought stress | 5.944 |
| SRR1811619 | moderate drought stress | 5.736 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 7.119 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 8.320 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 7.944 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 7.012 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 3.562 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 3.580 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 0.000 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 4.288 |
| SRR2868004 | Drought Stress (root) | 3.914 |
| SRR2967015 | Control (root) | 4.252 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 0.000 |
| SRR9715740 | Leaf | 0.000 |
| SRR9715741 | Leaf | 0.000 |
| SRR9715739 | Root | 4.759 |
| SRR9715742 | Root | 2.375 |
| SRR9715743 | Root | 2.760 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 5.739 |
| SRR8749028 | MeJA induced 9h | 0.169 |
| SRR8749029 | MeJA induced 9h | 3.543 |
| SRR8749030 | Uninduced | 0.000 |
| SRR8749031 | Uninduced | 0.055 |
| SRR8749032 | Uninduced | 4.313 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 6.260 |
| SRR8400027 | Control - Root | 4.832 |