Gene detail information of Glyur000077s00006728 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT1G17680.2 | 6.00E-153 | tetratricopeptide repeat (TPR)-containing protein |
| NR | KHN05439.1 | 0 | General transcription factor 3C polypeptide 3 [Glycine soja] |
| COG | YP_002731704.1 | 6.00E-10 | TPR Domain containing protein [Persephonella marina EX-H1] |
| trEMBL | tr|K7LSR3|K7LSR3_SOYBN | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA12G03131.2} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00077 | 345817 | 358558 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000077s00006728.1 | PF13414.1 | TPR_11 | 168 | 223 | 2.80E-07 |
| Glyur000077s00006728.1 | PF13371.1 | TPR_9 | 232 | 301 | 5.10E-06 |
| Glyur000077s00006728.1 | PF13371.1 | TPR_9 | 337 | 386 | 0.069 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 9.794 |
| SRR1783600 | control | 9.603 |
| SRR1783602 | moderate drought stress | 10.193 |
| SRR1811619 | moderate drought stress | 10.078 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 8.784 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 8.828 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 2.628 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 2.455 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 7.430 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 7.261 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 6.752 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 6.653 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 10.321 |
| SRR2868004 | Drought Stress (root) | 11.597 |
| SRR2967015 | Control (root) | 11.760 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 5.723 |
| SRR9715740 | Leaf | 9.490 |
| SRR9715741 | Leaf | 8.558 |
| SRR9715739 | Root | 0.900 |
| SRR9715742 | Root | 4.715 |
| SRR9715743 | Root | 4.523 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 8.443 |
| SRR8749028 | MeJA induced 9h | 8.000 |
| SRR8749029 | MeJA induced 9h | 5.189 |
| SRR8749030 | Uninduced | 1.239 |
| SRR8749031 | Uninduced | 0.986 |
| SRR8749032 | Uninduced | 1.066 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 14.108 |
| SRR8400027 | Control - Root | 13.474 |