Gene detail

Gene detail information of Glyur000077s00006727.2

Functional Annotation

Database	Orthologs	Annotation
TAIR	AT1G50200.1	Alanyl-tRNA synthetase
NR	XP_004505726.1	PREDICTED: alanine--tRNA ligase-like [Cicer arietinum]
COG	YP_005445253.1	alanyl-tRNA synthetase [Phycisphaera mikurensis NBRC 102666]
Swissprot	tr\|P36428\|SYA_ARATH	Alanine--tRNA ligase {ECO:0000255\|HAMAP-Rule:MF_03133} (Precursor)
trEMBL	tr\|G7JNH3\|G7JNH3_MEDTR	Alanine--tRNA ligase {ECO:0000256\|HAMAP-Rule:MF_03133}

Sequence

Transcript Sequence

>Glyur000077s00006727.2
CGTTAAAGCAATTTAAGACACACAAGACATGAGTGAAGGAGTGAATGAAAAGAGGATTCTGTAGTGTTCTCATTTCTCTCTGCAATCGTAACCATAGCCCTCCATTGGCGCCGCCATCCTCACTCCTCATTCGCGGCGTCTCCNTCTGCAGATCTCCTCTCTCCGCCGCCATGCCTGGTGCTGATATGGAGTGGCCGGCCAAGNGTGTGAGAGACACCTTCATCAAGTTCTTCGAAGACAAGAGCCATGTCAACTGGAAGTCTAGCCCTGTCGTCCCCTTCAACGACCCAACCCTCCTCTTTGCTAACGCTGGGATGAATCAGTACAAACCAATCTTTCTGGGAACTGTTGATCCTAACACTGCCTTGAGCAAACTCTCTCGTGCTTGCAACACCCAAAAGTGCATTCGAGCTGGTGGTAAACACAATGATCTCGACGATGTGGGGAAAGACACCTACCATCACACCTTCTTTGAGATGCTGGGCAATTGGTCATTTGGGGATTACTTTAAAGAAGAAGCCATTAGCTGGGCATGGGAACTTCTAACGAAAGTTTATAAATTACCATCAGATCGCATTTATGCCACATATTTTGGTGGTGATGAGAAGTCTGGTCTTGCCCCTGATATTGAGGCTAGAGATATATGGTTAAAGTTTTTGCCTCCCGGACGTGTACTTCCTTTTGGCTGTAAAGACAATTTTTGGGAGATGGGTGACACTGGTCCTTGTGGACCTTGCACTGAAATACATTTTGACAGAATTGGTAACCGTGACGCTGCATCTTTGGTTAATAATGATGATCCTACCTGCATTGAGATATGGAACCTTGTCTTTATTCAGTTCAATAGGGAGGCTGATGGCTCTCTTAAACCTCTGCCTGCAAAGCATGTTGATACAGGCATGGGCTTTGAACGATTGACCTCTATACTACAAAACAAAATGAGCAATTATGACACTGATGTCTTCTTGCCTATCTTTGATGCTATTCAGCTGGCAACTGGTGCTCGGCCATATTCTGGGAAAGTCGGAGCAGATGATGCAGATAAAGTTGACATGGCATACAGGGTTGTTGCAGATCACATAAGAACTCTGTCATTTGCGATTGCTGATGGATCTCGTCCTGGTAATGACGGCCGTGAGTATGTTCTGAGGCGTATACTCCGTCGTGCTGTTCGGTATGGACGTGAAGTGCTAAAAGCTGAAGAGGGTTTTTTCAATCGGCTTGTAAATGTTGTGGTGAATGTGATGGGTGATGTTTTCCCTGAGCTAAAACAGCAGGAAGTGCACATTAGAGACGTAATTAAAGAGGAGGAGGAAAGTTTTGGCAGAACCTTAATTAAGGGGATTGATAAATTTAAGACAGCTGTTCAACATGTTCAGGGAANGATACTGAGCGGGGAGGCAACATTTGTGTTGTGGGATACATATGGGTTCCCATTAGATCTCACACAGCTTATGGCTGAAGAAAAGGGATTGCTTGTTGATGTCAAAGGTTTTAATAGTGCTATGGAAGCTGCAAGAGAAAGATCAAGAAATGCTCAAACAAAGCAAGCTGGTGGTGCCNTTGTCATGGATGCTGATGCTACGTCAGCATTGCACAAAAGGGGCATTGCTCCAACAGATGATANCTTCAAATATGCTTGGTTCAAGGACCATGAGAGTGTCGTAAAAGCAATATATACTGGTTCTGAGTTTGTTGATTCTGTTAATATGGATGGTGATATTGGTGTAGTTCTGGAATCTACAAGCTTCTATGCTGAGCAAGGTGGTCAGATTTTCGATACTGGATCACTTGATTGTCAACATGCTTCATTTCAAGTTCGTAATGTTCAAATTTATGGAGGTTTTGTTCTTCACATTGGTAATGGGACTGGTATCTCTGTTGGGGACAAAGTAGTATGCAAGGTTGATTATGGAAGACGTGCCCTTATAGCCCCTAACCATACCTGCACACACATGTTAAATTTCGCTCTTAGGGAAGTACTTGGCAATCATGTTGACCAGAAAGGATCTATTGTTCTTCCTGAAAAATTGAGATTTGATTTTTCTCATGGCAAGCCTGTTGATGCTGATAGTTTGAGAAGAATCGAGTCAATTGTTAATGAGCAAATTAAAGCTGAATTGGATGTAAGNGCAAAGGAGGCAACTCTTGCTGAAGCCAAGCGTATCAATGGTCTGCGAGCTGTTTTCGGAGAAGTCTATCCTGATCCGGTTAGAGTTGTGTCAATTGGACAAAAAGTTGAGGATCTCCTTGCTGACCCTGTGAATGAAAAATGGTTATCTATTTCATCAGAATTATGTGGTGGTACCCATATTTCGAACACACGAGAGGCTAAAGCTTTTGCACTTTTATCTGAGGAGGGAATTGCAAAAGGAATTCGCAGAATAACAGCTGTCACAACTGATCGTGCTTCTGATGCAATGACAATGGCAGATGAATTCGAGCAGCAAGTAGATGAAGCAGCTAAGTTAGAAGGAAGCTTGCTGGAAGAGAAAGTTTCATCTCTGAAAAGCAATGTGGAAACGTTATCAATTCCTGCAGCCAAGAAGGCTGACATCAAGACCAAGATAGCCCAACTTCAGGATCAAGTGAGAAAAGCGCAAAAGCGGGTTGCTGAAGAAAACAAACGTAAAGCTGTAATGATCACAGCTGAGAAGGCTGATCTAGCTGCTTCAGGTGGGAAATCTTTTTGCATATCTCACGTTGATGTTGGCTTGGATGTAGCAGCAGTTCGTGAGGCTGTTACAAAAGTCATGGACCAGAAGGGGTTGTCTGTGATGGTTTTTAGCATTGATGAATCTACAAACAAGGCTGTAGTTTGTGCTGGGGTGCCGGAGAAAGGAGATAAAGGTAAGCTGGATGTGTCAGAATGGTTGAGTAATGCTTTGGGGCCACTGAAAGGGAGATGTGGTAAAGGAAAAGGTGGTCTTGCGACAGGACAGGGTACAGATGCATCACACGTAAATGAGGCTATGGATCTTGCAGCAAAATTTGCATCCATGAAATTGACTTAATGGTGCATTGCAGTATACCCTTCCTGTGTTGAAAGCATGATGCTGTGGTTATCTTACTATAATCATTAAGGGAAGAGCACTTTGAAGTAATTATTTATCTGGATGGGTTGAACAGAGTTTTAACCTTTAGTGCCTGAATAATTTTTCGGGTTGATAGAAACGGTCCACCATATAATAGCAATTGCTTTGATTTAAGCAAGCAATAGATTATCAAGATATTATGAGATTC

Protein Sequence

>Glyur000077s00006727.2
MKRGFCSVLISLCNRNHSPPLAPPSSLLIRGVSXCRSPLSAAMPGADMEWPAKXVRDTFIKFFEDKSHVNWKSSPVVPFNDPTLLFANAGMNQYKPIFLGTVDPNTALSKLSRACNTQKCIRAGGKHNDLDDVGKDTYHHTFFEMLGNWSFGDYFKEEAISWAWELLTKVYKLPSDRIYATYFGGDEKSGLAPDIEARDIWLKFLPPGRVLPFGCKDNFWEMGDTGPCGPCTEIHFDRIGNRDAASLVNNDDPTCIEIWNLVFIQFNREADGSLKPLPAKHVDTGMGFERLTSILQNKMSNYDTDVFLPIFDAIQLATGARPYSGKVGADDADKVDMAYRVVADHIRTLSFAIADGSRPGNDGREYVLRRILRRAVRYGREVLKAEEGFFNRLVNVVVNVMGDVFPELKQQEVHIRDVIKEEEESFGRTLIKGIDKFKTAVQHVQGXILSGEATFVLWDTYGFPLDLTQLMAEEKGLLVDVKGFNSAMEAARERSRNAQTKQAGGAXVMDADATSALHKRGIAPTDDXFKYAWFKDHESVVKAIYTGSEFVDSVNMDGDIGVVLESTSFYAEQGGQIFDTGSLDCQHASFQVRNVQIYGGFVLHIGNGTGISVGDKVVCKVDYGRRALIAPNHTCTHMLNFALREVLGNHVDQKGSIVLPEKLRFDFSHGKPVDADSLRRIESIVNEQIKAELDVXAKEATLAEAKRINGLRAVFGEVYPDPVRVVSIGQKVEDLLADPVNEKWLSISSELCGGTHISNTREAKAFALLSEEGIAKGIRRITAVTTDRASDAMTMADEFEQQVDEAAKLEGSLLEEKVSSLKSNVETLSIPAAKKADIKTKIAQLQDQVRKAQKRVAEENKRKAVMITAEKADLAASGGKSFCISHVDVGLDVAAVREAVTKVMDQKGLSVMVFSIDESTNKAVVCAGVPEKGDKGKLDVSEWLSNALGPLKGRCGKGKGGLATGQGTDASHVNEAMDLAAKFASMKLT

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00077	331239	342278	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
K01872	AARS, alaS	EC:6.1.1.7	Aminoacyl-tRNA biosynthesis	map00970
			Aminoacyl-tRNA biosynthesis	map00970

Gene Ontology

biological_process

GO:0006419 alanyl-tRNA aminoacylation

GO:0043039 tRNA aminoacylation

cellular_component
GO:0005737 cytoplasm

molecular_function

GO:0000166 nucleotide binding

GO:0003676 nucleic acid binding

GO:0004813 alanine-tRNA ligase activity

GO:0005524 ATP binding

GO:0016876 ligase activity, forming aminoacyl-tRNA and related compounds

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000077s00006727.2	PF01411.14	tRNA-synt_2c	55	623	5.40E-217
Glyur000077s00006727.2	PF07973.9	tRNA_SAD	723	781	1.40E-17
Glyur000077s00006727.2	PF02272.14	DHHA1	912	979	8.30E-05

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	30.509
SRR1783600	control	30.504
SRR1783602	moderate drought stress	24.634
SRR1811619	moderate drought stress	24.216

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	35.804
DRR006520	Root Summer glycyrrhizin high producing strain	35.619
DRR006521	Root Winter glycyrrhizin high producing strain	25.997
DRR006522	Root Winter glycyrrhizin high producing strain	24.472
DRR006523	Root Summer glycyrrhizin low producing strain	33.215
DRR006524	Root Summer glycyrrhizin low producing strain	33.370
DRR006525	Leaf Summer glycyrrhizin high producing strain	59.104
DRR006526	Leaf Summer glycyrrhizin high producing strain	58.221

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	63.587
SRR2868004	Drought Stress (root)	55.092
SRR2967015	Control (root)	63.791

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	56.073
SRR9715740	Leaf	61.082
SRR9715741	Leaf	64.296
SRR9715739	Root	7.461
SRR9715742	Root	36.217
SRR9715743	Root	31.638

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	83.302
SRR8749028	MeJA induced 9h	85.096
SRR8749029	MeJA induced 9h	64.517
SRR8749030	Uninduced	25.802
SRR8749031	Uninduced	29.711
SRR8749032	Uninduced	26.280

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	52.550
SRR8400027	Control - Root	49.421