Gene detail information of Glyur000077s00006715 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT1G09820.1 | 0 | Pentatricopeptide repeat (PPR-like) superfamily protein |
| NR | XP_004505735.1 | 0 | PREDICTED: pentatricopeptide repeat-containing protein At1g09820-like [Cicer arietinum] |
| Swissprot | tr|O04504|PPR27_ARATH | 0 | Pentatricopeptide repeat-containing protein At1g09820 |
| trEMBL | tr|G7JQV7|G7JQV7_MEDTR | 0 | PPR containing plant-like protein {ECO:0000313|EMBL:AES91224.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00077 | 266775 | 269579 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000077s00006715.1 | PF01535.15 | PPR | 167 | 196 | 0.033 |
| Glyur000077s00006715.1 | PF13041.1 | PPR_2 | 202 | 247 | 3.50E-15 |
| Glyur000077s00006715.1 | PF12854.2 | PPR_1 | 269 | 300 | 2.30E-09 |
| Glyur000077s00006715.1 | PF13041.1 | PPR_2 | 306 | 355 | 2.60E-21 |
| Glyur000077s00006715.1 | PF12854.2 | PPR_1 | 374 | 404 | 1.30E-08 |
| Glyur000077s00006715.1 | PF13041.1 | PPR_2 | 411 | 460 | 2.10E-17 |
| Glyur000077s00006715.1 | PF13041.1 | PPR_2 | 481 | 530 | 1.10E-15 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 2.545 |
| SRR1783600 | control | 2.583 |
| SRR1783602 | moderate drought stress | 2.676 |
| SRR1811619 | moderate drought stress | 2.630 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 3.720 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 3.940 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 3.711 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 3.792 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 2.712 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 2.369 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 1.225 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 1.261 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 2.747 |
| SRR2868004 | Drought Stress (root) | 4.071 |
| SRR2967015 | Control (root) | 4.557 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 1.457 |
| SRR9715740 | Leaf | 0.479 |
| SRR9715741 | Leaf | 1.418 |
| SRR9715739 | Root | 0.050 |
| SRR9715742 | Root | 1.451 |
| SRR9715743 | Root | 1.318 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 6.798 |
| SRR8749028 | MeJA induced 9h | 3.013 |
| SRR8749029 | MeJA induced 9h | 6.779 |
| SRR8749030 | Uninduced | 2.003 |
| SRR8749031 | Uninduced | 3.271 |
| SRR8749032 | Uninduced | 2.298 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 7.946 |
| SRR8400027 | Control - Root | 6.639 |