Gene detail information of Glyur000077s00006714 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT3G19830.2 | 0 | Calcium-dependent lipid-binding (CaLB domain) family protein |
| NR | XP_003538975.1 | 0 | PREDICTED: synaptotagmin-3-like [Glycine max] |
| Swissprot | tr|B6ETT4|SYT2_ARATH | 2.00E-08 | Synaptotagmin-2 |
| trEMBL | tr|I1LIV4|I1LIV4_SOYBN | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA11G11010.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00077 | 260041 | 265892 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000077s00006714.1 | PF10296.4 | DUF2404 | 232 | 305 | 7.80E-05 |
| Glyur000077s00006714.2 | PF10296.4 | DUF2404 | 232 | 305 | 7.70E-05 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 5.935 |
| SRR1783600 | control | 5.797 |
| SRR1783602 | moderate drought stress | 6.573 |
| SRR1811619 | moderate drought stress | 6.602 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 20.676 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 20.169 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 5.201 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 5.070 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 10.093 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 9.961 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 15.285 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 15.455 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 20.210 |
| SRR2868004 | Drought Stress (root) | 37.850 |
| SRR2967015 | Control (root) | 21.863 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 65.126 |
| SRR9715740 | Leaf | 50.295 |
| SRR9715741 | Leaf | 82.808 |
| SRR9715739 | Root | 10.443 |
| SRR9715742 | Root | 52.258 |
| SRR9715743 | Root | 43.866 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 4.888 |
| SRR8749028 | MeJA induced 9h | 5.605 |
| SRR8749029 | MeJA induced 9h | 4.729 |
| SRR8749030 | Uninduced | 10.541 |
| SRR8749031 | Uninduced | 10.562 |
| SRR8749032 | Uninduced | 6.712 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 23.937 |
| SRR8400027 | Control - Root | 23.790 |