Gene detail

Gene detail information of Glyur000077s00006703

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT5G64520.2	1.00E-81	homolog of X-ray repair cross complementing 2 (XRCC2)
NR	XP_004505753.1	0	PREDICTED: DNA repair protein XRCC2 homolog isoform X1 [Cicer arietinum]
Swissprot	tr\|Q682D3\|XRCC2_ARATH	4.00E-99	DNA repair protein XRCC2 homolog
trEMBL	tr\|A0A072UXF4\|A0A072UXF4_MEDTR	0	X-ray repair cross complementing 2 (XRCC2)-like protein, putative {ECO:0000313\|EMBL:KEH30550.1}

Sequence

Transcript Sequence

>Glyur000077s00006703.1
GTTGTTACGTTGTGTAAGGGCGCGAAAAGAGGTGGTGTACATTGGAAATTGGAAGCAAGACGAACAAGTGAAATTGAGAAGAAGAAGGAATGAACAAGAAGAAGAAAGAGAGAGAGGAAGTTGAAGTGGAAAGGTGGATAAGGGGAGATGAGAGTGGGTGGGAGATGCTAAGAAGGGTGTGGAGGGTGCGACCTTTCATGCTTCCTCCGCCACTTCACAGGGTTCCTCTCCGTGCCGGCAACGTCCTCGAGTTAGTGGGTCCCTCTCCTTCTGCCAAAACCCATATCCTCATTCAGGCNGCGATCAAGTGCATTCTTCCCAAACAGTGGAATGGGGTACACTACGGAGGCTTCGACCATTTGGCGCTCTTTATTGACCTCGATTGTCGCTTTGATATNAAGCGTTTCTCCCAAATCCTCATTCATCGGATTATGGAACCTCACGGGGAAGCTAGTGGAGATTATGATAAAACGTTATATGATTTGTGCATGGCCCGTTTTTTGTATGTCCGTTGTTCTGACAGTTTTCAACTTCTTCAGACTCTCAAGACCTTACATTGGCGCTTAGATAAGGAGAAAGAAGTTCACGGGGTTAGTGTTCACCTGCTCATGATTGACAGCATTGGAGCTTTTCATTGGATGGATCGTGCATCTATGTTCTTGTCTCTAAAAGAAAACAACAGAAAAAAGCTTTTCCTTCAGAGTGTGTCAGAAGCTGTAGTTCAGGATATTAAAAAACTTCTTCAGGTGCATCCTATGCTTGTTATAGCTACAAAGTCAGTGATTTTTTGGAATAGATATTCTACAGCTTCAACTGAGGTCAAAGGAAATTTTATAAAAAATAATTGGGAGGAAAGATGTTCAAGAAATGTAACAAGAAACCGTCAACCCTTTCAGTATCGTGAGTACATGCCTTCTATTTGGCAGTCCTTTGTTACACACAGGATACTTGTACGTTCTTCAGAATATTCCCGCTTTTCAGATGATCATTCTGTTACAAGCAATTGTCAGAACTCCTCATTCTATTTGTTGGAATGGTTATTGCCAAGATTGAATTTTCCAGACAAGATTGTAGTGAAAGATGCTGGTGTTTTTGTNGAATCATGAAGCATGTTTGCAGAGGGATGTCAATGTGTGATCTATTACTGCTTTTCAATTCTGGATTCAGTAAAAGCTCTTAAACAAAAGGAGTATATGACTTCTTGATTGGACTCAATATTATGATGCAAATAG

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00077	190696	194778	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process

GO:0000724 double-strand break repair via homologous recombination

GO:0006281 DNA repair

cellular_component

GO:0005657 replication fork

GO:0033063 Rad51B-Rad51C-Rad51D-XRCC2 complex

molecular_function

GO:0003677 DNA binding

GO:0005524 ATP binding

GO:0008094 DNA-dependent ATPase activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
--	--	--	--	--	--

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	1.035
SRR1783600	control	1.070
SRR1783602	moderate drought stress	0.627
SRR1811619	moderate drought stress	0.541

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	0.671
DRR006520	Root Summer glycyrrhizin high producing strain	0.761
DRR006521	Root Winter glycyrrhizin high producing strain	0.515
DRR006522	Root Winter glycyrrhizin high producing strain	0.499
DRR006523	Root Summer glycyrrhizin low producing strain	0.701
DRR006524	Root Summer glycyrrhizin low producing strain	0.724
DRR006525	Leaf Summer glycyrrhizin high producing strain	0.794
DRR006526	Leaf Summer glycyrrhizin high producing strain	0.729

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	2.672
SRR2868004	Drought Stress (root)	2.937
SRR2967015	Control (root)	2.009

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	0.689
SRR9715740	Leaf	0.511
SRR9715741	Leaf	0.170
SRR9715739	Root	0.080
SRR9715742	Root	0.386
SRR9715743	Root	0.475

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	3.044
SRR8749028	MeJA induced 9h	1.706
SRR8749029	MeJA induced 9h	1.341
SRR8749030	Uninduced	0.052
SRR8749031	Uninduced	0.015
SRR8749032	Uninduced	0.214

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	2.208
SRR8400027	Control - Root	2.320