Gene detail information of Glyur000077s00006702 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT1G50280.1 | 3.00E-126 | Phototropic-responsive NPH3 family protein |
| NR | KEH30547.1 | 0 | phototropic-responsive NPH3 family protein [Medicago truncatula] |
| Swissprot | tr|Q8RXR6|Y1028_ARATH | 2.00E-153 | BTB/POZ domain-containing protein At1g50280 |
| trEMBL | tr|A0A072ULH0|A0A072ULH0_MEDTR | 0 | Phototropic-responsive NPH3 family protein {ECO:0000313|EMBL:KEH30547.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00077 | 185824 | 188915 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000077s00006702.1 | PF03000.9 | NPH3 | 209 | 440 | 2.90E-56 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 35.930 |
| SRR1783600 | control | 35.845 |
| SRR1783602 | moderate drought stress | 36.778 |
| SRR1811619 | moderate drought stress | 36.537 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 65.036 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 64.475 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 16.941 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 16.362 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 35.604 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 35.626 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 0.867 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 0.863 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 10.767 |
| SRR2868004 | Drought Stress (root) | 10.016 |
| SRR2967015 | Control (root) | 9.244 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 0.411 |
| SRR9715740 | Leaf | 0.420 |
| SRR9715741 | Leaf | 0.203 |
| SRR9715739 | Root | 7.758 |
| SRR9715742 | Root | 20.778 |
| SRR9715743 | Root | 17.553 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 0.095 |
| SRR8749028 | MeJA induced 9h | 0.058 |
| SRR8749029 | MeJA induced 9h | 0.054 |
| SRR8749030 | Uninduced | 0.057 |
| SRR8749031 | Uninduced | 0.068 |
| SRR8749032 | Uninduced | 0.126 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 45.676 |
| SRR8400027 | Control - Root | 65.877 |