Gene detail

Gene detail information of Glyur000077s00006693.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT4G33840.1	0	Glycosyl hydrolase family 10 protein
NR	XP_003621871.1	0	Endo-1,4-beta-xylanase C [Medicago truncatula]
COG	YP_001869707.1	2.00E-47	glycoside hydrolase family protein [Nostoc punctiforme PCC 73102]
trEMBL	tr\|G7KWV0\|G7KWV0_MEDTR	0	Glycosyl hydrolase family 10 protein {ECO:0000313\|EMBL:AES78089.1}

Sequence

Transcript Sequence

>Glyur000077s00006693.1
ATGCAACCACAGAAGCCTCAGTACAATGGAGGAATCATTCGAAACCCAGAACTTAATGATGGACTAGACGGGTGGACAACATTTGGGGATGCAATAATAGAACACAGAGAATCATTAGGAAACAAATATGTGGTAGCCCATAGCAGAAAACAAGCACATGATAGTGTCTCCCAGAAGATTTACCTGCAAAAAGGGAAGCATTATACTTTATCTGCTTGGATACAAGTGAGTGAGGGAAATTATCCGGTAACAGCAGTGGTCAAAACAAGCAAAGGATTTAAACTTGCTGGTGCCATTTTTGCTGAGCCTAATTGCTGGTCTATGCTTAAGGGTGGTCTCACAATGGATACATCAGGAGTAGCTGAGCTCTATTTTGAGAGCAACAATACTTCTGTGGAAATTTGGATCGATAGCATTTCCTTACAACCATTCACAGAAAAGCAATGGAGATCTCACCAAGATCAAAGTATTGAAAAGGCCCGCAAGAGAAAGGTGTTAGTCCAAGCAGTTGATGAACAAGGACACCCTTTACAAAATGCAAGTATATCTATTGCAATGAAGAGGTTGGGTTTTCCATTTGGAAGTGCCATAAANAGTTACATCCTAAACAATAGTGCATATCAAAATTGGTTCACCTCTAGATTCACAGTTACCACATTTGCAAATGAAATGAAGTGGTANAGCACCGAATATGAGCAAGGCAAGGAGAACTACTCGGTTGCTGATGATATGCTACAGTTTGCCAAGCAACACAATATTTCCGTTCGAGGCCACAATATATTTTGGGATGATCCTAGTTACCAACCTAGTTGGGTTCCTTCACTCTCACCCAGCCAGCTTAACTCAGCAGTCGAAAAGAGGTTGAATTCCATTGTGTCAAGATACAGGGGCCANCTTATTGGCTGGGATGTTGTTAATGAAAATATGCACTTCTCATTCTTCGAAAGTAAACTTGGACAAAATTTTTCAGCCAAGATTTTTAGTGAGGTACACAACATTGATGGACAAACACCTTTATTCTTGAATGAATATAATACCATTGAGGACAGTAGAGATGGTTTATCAAACCCAACAAGGTACACTCAGAAGATCAAAGAGATCCAAAGTTATTATGGGAATAGTCAATTGCCTATTGGGATTGGGCTGGAGTCCCATTTCCCTAATTGTAGCCCTCCCAACTTGCCCTATATGAGAGCTTCCATTGATTACCTTGCTGCCACTGGTTTGCCAATTTGGATTACAGAAGTAGATGTTGCAAGCCAACCTAATCAGGCAGAGTACTTCAAGCAGGTTCTTAGAGAAGCACACTCCCACCCAAAGATTCAGGGCATTGTAATGTGGACAGCATGGTCACCAGAAGGATGCTATAGGATTTGCTTGGTAGATAACAATTTCAATAACTTGCCTGCAGGGTGTGTTGTGGATGAACTGCTTAATGAGTGGGGGTTGAAAAAATTATCAAGGACCACAGACCAAAATGGGTTCCTTGATGCCTCCCTTTTTCATGGCGACTACGAAATGAAAATTAGGCACCCCATTAAGAAGAACTATTCTTTCTCTTCTCACATACAATGTTTGACACACCCACAAAAGCCTCAGTACAATGGAGGAATCATTCGAAACCCAGAACTGAACGATGGACTGCAAGGGTGGACAGCATTNGGGGACGCAATAATAGAACATAGAGAGTCATTAGGCAACAAATATGTGGTAGCCCATAGCAGAAATCAAGCACAAGACAGTGTCTCCCAGAAGATTTACTTGCAAAAGGGGAAGCATTATACTTTATCTGGAAATGCTCCGGTAACAGCAGTTTTCAAAACAAGTAAAGGAATCATACTTGCTGGTGCCATTTTTGCTGAACCTAATTGTTGGTCTATGCTTAAAGGTGGTCTCACAGCAGATACATCAGGAGCAGCTAATCTCTATTTTGAGGTTGGGTTTTCCATTCGGAAGTGCCATAAATAG

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00077	119753	131740	+

Gene family

Gene family	subfamily
Carbohydrate-Active enzymes Family	CBM22,GH10

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0005975 carbohydrate metabolic process

molecular_function

GO:0004553 hydrolase activity, hydrolyzing O-glycosyl compounds

GO:0016798 hydrolase activity, acting on glycosyl bonds

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000077s00006693.1	PF02018.12	CBM_4_9	11	128	3.40E-10
Glyur000077s00006693.1	PF00331.15	Glyco_hydro_10	191	450	4.90E-46

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	0.000
SRR1783600	control	0.000
SRR1783602	moderate drought stress	0.009
SRR1811619	moderate drought stress	0.000

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	0.000
DRR006520	Root Summer glycyrrhizin high producing strain	0.000
DRR006521	Root Winter glycyrrhizin high producing strain	0.000
DRR006522	Root Winter glycyrrhizin high producing strain	0.000
DRR006523	Root Summer glycyrrhizin low producing strain	0.000
DRR006524	Root Summer glycyrrhizin low producing strain	0.000
DRR006525	Leaf Summer glycyrrhizin high producing strain	0.094
DRR006526	Leaf Summer glycyrrhizin high producing strain	0.078

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	0.000
SRR2868004	Drought Stress (root)	0.000
SRR2967015	Control (root)	0.000

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	0.000
SRR9715740	Leaf	0.000
SRR9715741	Leaf	0.000
SRR9715739	Root	0.000
SRR9715742	Root	0.029
SRR9715743	Root	0.000

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.000
SRR8749028	MeJA induced 9h	0.085
SRR8749029	MeJA induced 9h	0.000
SRR8749030	Uninduced	0.162
SRR8749031	Uninduced	0.000
SRR8749032	Uninduced	0.000

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	0.001
SRR8400027	Control - Root	0.017