Gene detail

Gene detail information of Glyur000077s00006692

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT2G21120.1	1.00E-119	Protein of unknown function (DUF803)
NR	XP_004505767.1	0	PREDICTED: magnesium transporter NIPA2-like [Cicer arietinum]
Swissprot	tr\|Q8GWX2\|NIPA6_ARATH	1.00E-176	Probable magnesium transporter NIPA6
trEMBL	tr\|A0A072UL97\|A0A072UL97_MEDTR	0	Magnesium transporter NIPA2-like protein {ECO:0000313\|EMBL:KEH30534.1}

Sequence

Transcript Sequence

>Glyur000077s00006692.1
AAAAAACAAAGAAGAAGAAATAATTGAATAACTTTAACTTTAACTCCCCAAGATCCATCCCATCCGATTTTCCAATCCCATCCGTGTCTTTGTTCAACTGTTCACTCACTCCGTCACATGGATCAACAGAGAGGCGCATCCGAGGGCGGATTTTCCGCGAAGCAGAGGATCAATCCCACGGGATTACGGCGGAAACTTCTGACGAATCGAGATCAGAATAAAAGTGTCGTTGCTTTCCATCNGTAGCTAGAAGCGAAGTGAGCGAGTGTGAGTCACACCCATCAGATTCAGAGTGAAAAAAAAACGAAGCGCTTTGCAGAGAGAACAAAACACCTGTGCTCTCTCTGCGCCATTCTCTGTGGTTCTCTCCATTGTGGAAATTCCATCTCTCTTTCTCTTTCTCTTTCTCTTGGCGGGAAAATTAAGCAAGCGCAACGTCGTCGTCGTTTATAGGCAACAATTGGATTCGAGTTAGAAGAGGTAGAGAGAGATGGGGGTTTCGGAGAATCTCACGGGACTGATACTGGCGATGTGTTCTAGTGCATTCATTGGTGCTAGCTTCATCTTGAAGAAGAAGGGTCTTAAGCGTGCTGCTGCACGCGGTACTCGTGCAGGAGTTGGCGGTTATACTTATCTAGTAGAGCCACTTTGGTGGGCTGGCATGGTAACAATGATTATTGGGGAGGTTGCAAACTTTGTGGCTTATATTTATGCTCCGGCTGTTCTGGTTACTCCCCTTGGTGCTCTTAGTATTATTGTCAGTTCTGTTTTGGCTCACTTCTTGTTGAAGGAACGGCTTCAGAAGATGGGGGTCTTGGGATGTGTATCCTGCATTGTGGGATCAATTGTCATTGTCATCCATGCACCACAAGAGCACACTCCAAGTTCTGTCCAAGAAATATGGGTTCTGGCCACTCAACCAGATTTTTTAGTTTATGCCGTCGCAACAGTTTCATTAGTTTTGGCCTTGATTTTACACTTTGAACCTCGCTATGGACAGACAAATATGCTGGTCTACTTGGGAATTTGTTCATTAATGGGCTCACTTACGGTTGTGAGCGTAAAGGCCATTGGAATTGCAATAAAGCTTACACTTGATGGAATAAGTCAAGTAGCTTATCCTCAGACTTGGTTTTTNGTTACAGTGGCCACAATATGTGTCATTACACAGTTGAATTACCTTAACAGGGTGACTTATTTCACTATTCAACTATGTTTTCAGGCCCTGGATACATTCAATGCAGCAATTGTTTCTCCTGTATATTATGTGATGTTCACAACTCTTACTATTATTGCCAGTGCAATAATGTTTAAGGATTGGTCTGGTCAGGATGTCAGCAGCATAGCCTCTGAGATATGTGGATTCATCACCGTTCTTTCAGGAACAATCATGTTGCATGGCACTAAAGAACAGGAAGAATCTAGTAGGCAAGGGACCTTGGCATGGTTTATTGGTGACGACTCGATGAAGTGCATTGAGGATGAACACCTGATCGTAATACATGGTTCGGATTATCATGGACATTGA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00077	110458	113890	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0015693 magnesium ion transport

cellular_component
GO:0016021 integral component of membrane

molecular_function
GO:0015095 magnesium ion transmembrane transporter activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000077s00006692.1	PF05653.9	Mg_trans_NIPA	5	311	3.50E-132

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	4.891
SRR1783600	control	4.759
SRR1783602	moderate drought stress	2.410
SRR1811619	moderate drought stress	2.374

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	8.817
DRR006520	Root Summer glycyrrhizin high producing strain	8.785
DRR006521	Root Winter glycyrrhizin high producing strain	2.605
DRR006522	Root Winter glycyrrhizin high producing strain	2.629
DRR006523	Root Summer glycyrrhizin low producing strain	23.624
DRR006524	Root Summer glycyrrhizin low producing strain	23.614
DRR006525	Leaf Summer glycyrrhizin high producing strain	2.419
DRR006526	Leaf Summer glycyrrhizin high producing strain	2.337

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	15.586
SRR2868004	Drought Stress (root)	16.064
SRR2967015	Control (root)	13.381

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	6.365
SRR9715740	Leaf	3.209
SRR9715741	Leaf	5.077
SRR9715739	Root	8.260
SRR9715742	Root	11.098
SRR9715743	Root	11.477

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	57.456
SRR8749028	MeJA induced 9h	46.750
SRR8749029	MeJA induced 9h	41.886
SRR8749030	Uninduced	29.755
SRR8749031	Uninduced	7.455
SRR8749032	Uninduced	8.995

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	13.311
SRR8400027	Control - Root	17.317