Gene detail

Gene detail information of Glyur000077s00006690

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT4G34880.1	4.00E-129	Amidase family protein
NR	XP_004505809.1	0	PREDICTED: putative amidase C869.01-like [Cicer arietinum]
COG	YP_003321515.1	2.00E-109	Amidase [Sphaerobacter thermophilus DSM 20745]
Swissprot	tr\|B6U151\|GATA_MAIZE	2.00E-32	Glutamyl-tRNA(Gln) amidotransferase subunit A, chloroplastic/mitochondrial {ECO:0000255\|HAMAP-Rule:MF_03150} (Precursor)
trEMBL	tr\|A0A072ULF6\|A0A072ULF6_MEDTR	0	Amidase C869.01-like protein, putative {ECO:0000313\|EMBL:KEH30532.1}

Sequence

Transcript Sequence

>Glyur000077s00006690.1
ATGGGAACAACAACAACAACAACAGCCAAGGTGGTTTACGTTTGTGCGGTCCTTTTATTGGCAGTGGTTTTCAGAATCTCCTCCACTAACGCAATCGATGAGTGTTTATGGATCAGCGAAGCCACCATAGAGGACATACAAGAGGCCTTCCAACGGAACGAGCTAACGTCGAGGCAACTCGTTGACTATTACCTGCACAGAATCGAGGCCCTCAATCCCATGCTTCGCGCTGTACTGGAAGTCAATCCTGACGCAAGGGATCAAGCGGACAAGGCTGATCGNGAGAGGCGAGAGGATCATCGGGACCGTTCATCATCGCTGCATGGGATCCCTGTATTGCTGAAGGACAGCATCGCCACGTTGGATAAACTCAACACAACGGCTGGTTCCTATGCGTTGTTGGGGTCAAAGGTACCACGTGACGCGCACGTGGTGTCAAGGCTCAGGGATGCAGGTGCCATCATTTTGGGCAAAACTAGTCTCTCAGAGTGGTATGGGACTCGCTCTCTCACTATGCCTGAAGCTTGGTGCGCAAGAGGTGGAATTGCCCTGAATCCTTATGTGGAGTCGCGAAGTCCATGTGGGTCTAGCTCAGGATCCGCCATTTCAGTGGCAACTAACATGGTTGCAGTTTCTTTGGGGACTGAAACCGATGGCTCCATTATCTGTCCAGCTGATCACAACTCAGTAGTGGGGTTTAAGCCCACTGTTGGACTCACCAGCAGGGCAGGTGTCATACCAATTACACCTCGTCAAGATACAATCGGGCCAATATGCAGGACAGTTTCAGATGCAGTTCATGTGCTTGATGTGATTGTTGGGTTTGACCCAAGAGACTCTCAAGCTACAGAGGCGGCAGCTAAGTTTACACCTCCAGGGGGTTATAAGCAATTCCTCAAAATACANGGGCTCAAAGGAAAGAAGCTAGGTGTTGTGAGGAATCCATTTTTTGATGCTTATAATGGATCATCCAGTGTCATTTCCATCTTTGAGCATCATCTCAGTGTATTGAGGCAAAGGGGTGCAGCAGTGGTAGATAATTTGGAAATAGAAAACTTAAGCATCATTCTCGACCCTTTCCAAAATGGTGAAGAAATAGCCTTCCGGGCAGAGGTCAAGTTGTCCATCAACGATTATCTGCAAGAGCTCATTTATTCTCCCGTGAGGTCACTAGCTGAGGTTATTGAGTTCAACATCAATAACCCTGATTTAGAAAAGACTAATGAGTATGGGCAGGAATTTTTCATCGCATCAGAAAAGTCCAGAGGCTTTGGAGAGAGGGAAATTGAGGCAGTGGAGATGATGGAGCAACTATCACAAAACGGATTTGAGAAGCTAATGAAGGAGAATGAATTNGATGCGTTGGTGACCATAGGCTCTGATGTTTCCCCAATGCTGGCAATTGGAGGGTATCCTGCAATCACTGTCCCAGCTGGGTATGACAGCCAGGGAATGCCATTTGGGATCTGTTTTGGGGGGTTAAAGGGTACTGAGCCAAAGTTAATTGAGATTGCTTATGATTTTGAGCAAGCCACTAGAGCAAGGAAGCCACCCCCTCACTTCTCATTTACCTGA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00077	98466	101934	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
K01426	E3.5.1.4, amiE	EC:3.5.1.4	Arginine and proline metabolism	map00330
			Phenylalanine metabolism	map00360
			Tryptophan metabolism	map00380
			Aminobenzoate degradation	map00627
			Styrene degradation	map00643

Gene Ontology

molecular_function
GO:0016884 carbon-nitrogen ligase activity, with glutamine as amido-N-donor

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000077s00006690.1	PF01425.16	Amidase	60	501	4.50E-75

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	7.578
SRR1783600	control	7.751
SRR1783602	moderate drought stress	2.260
SRR1811619	moderate drought stress	2.288

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	1.824
DRR006520	Root Summer glycyrrhizin high producing strain	1.890
DRR006521	Root Winter glycyrrhizin high producing strain	19.910
DRR006522	Root Winter glycyrrhizin high producing strain	18.624
DRR006523	Root Summer glycyrrhizin low producing strain	1.229
DRR006524	Root Summer glycyrrhizin low producing strain	1.313
DRR006525	Leaf Summer glycyrrhizin high producing strain	3.351
DRR006526	Leaf Summer glycyrrhizin high producing strain	3.518

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	33.710
SRR2868004	Drought Stress (root)	40.345
SRR2967015	Control (root)	34.494

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	17.386
SRR9715740	Leaf	7.504
SRR9715741	Leaf	24.942
SRR9715739	Root	3.055
SRR9715742	Root	14.126
SRR9715743	Root	11.840

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	64.010
SRR8749028	MeJA induced 9h	118.977
SRR8749029	MeJA induced 9h	87.338
SRR8749030	Uninduced	338.310
SRR8749031	Uninduced	246.493
SRR8749032	Uninduced	233.228

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	24.052
SRR8400027	Control - Root	12.025