Gene detail information of Glyur000077s00006686 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT2G21090.1 | 1.00E-179 | Pentatricopeptide repeat (PPR-like) superfamily protein |
| NR | XP_004505771.1 | 0 | PREDICTED: pentatricopeptide repeat-containing protein At2g21090-like [Cicer arietinum] |
| Swissprot | tr|Q9SKQ4|PP167_ARATH | 0 | Pentatricopeptide repeat-containing protein At2g21090 |
| trEMBL | tr|A0A072UXD1|A0A072UXD1_MEDTR | 0 | PPR containing plant-like protein {ECO:0000313|EMBL:KEH30525.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00077 | 81776 | 83452 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000077s00006686.1 | PF01535.15 | PPR | 92 | 118 | 0.0028 |
| Glyur000077s00006686.1 | PF01535.15 | PPR | 120 | 148 | 7.40E-07 |
| Glyur000077s00006686.1 | PF01535.15 | PPR | 151 | 179 | 4.60E-05 |
| Glyur000077s00006686.1 | PF01535.15 | PPR | 224 | 249 | 7.90E-06 |
| Glyur000077s00006686.1 | PF13041.1 | PPR_2 | 280 | 327 | 1.30E-09 |
| Glyur000077s00006686.1 | PF01535.15 | PPR | 354 | 376 | 0.52 |
| Glyur000077s00006686.1 | PF13041.1 | PPR_2 | 383 | 430 | 1.60E-10 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 1.844 |
| SRR1783600 | control | 1.892 |
| SRR1783602 | moderate drought stress | 1.514 |
| SRR1811619 | moderate drought stress | 1.644 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 2.224 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 1.924 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.512 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.346 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 2.957 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 3.286 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 0.522 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 0.568 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 5.544 |
| SRR2868004 | Drought Stress (root) | 3.795 |
| SRR2967015 | Control (root) | 2.943 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 0.837 |
| SRR9715740 | Leaf | 1.131 |
| SRR9715741 | Leaf | 0.621 |
| SRR9715739 | Root | 1.083 |
| SRR9715742 | Root | 2.193 |
| SRR9715743 | Root | 2.354 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 6.756 |
| SRR8749028 | MeJA induced 9h | 3.243 |
| SRR8749029 | MeJA induced 9h | 3.817 |
| SRR8749030 | Uninduced | 1.076 |
| SRR8749031 | Uninduced | 0.750 |
| SRR8749032 | Uninduced | 1.155 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 3.096 |
| SRR8400027 | Control - Root | 3.216 |