Gene detail information of Glyur000077s00006672 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT4G38670.3 | 1.00E-111 | Pathogenesis-related thaumatin superfamily protein |
| NR | XP_006592066.1 | 0 | PREDICTED: thaumatin-like protein 1-like isoform X2 [Glycine max] |
| Swissprot | tr|P83332|TLP1_PRUPE | 9.00E-85 | Thaumatin-like protein 1 (Precursor) |
| trEMBL | tr|K7LST4|K7LST4_SOYBN | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA12G03501.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00077 | 27319 | 30572 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000077s00006672.2 | PF00314.12 | Thaumatin | 31 | 249 | 2.00E-85 |
| Glyur000077s00006672.3 | PF00314.12 | Thaumatin | 31 | 249 | 1.10E-85 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 15.660 |
| SRR1783600 | control | 14.885 |
| SRR1783602 | moderate drought stress | 18.315 |
| SRR1811619 | moderate drought stress | 18.659 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 11.629 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 10.898 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 1.476 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 1.489 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 11.486 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 12.372 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 3.903 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 4.047 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 11.254 |
| SRR2868004 | Drought Stress (root) | 15.188 |
| SRR2967015 | Control (root) | 17.106 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 7.835 |
| SRR9715740 | Leaf | 6.316 |
| SRR9715741 | Leaf | 5.668 |
| SRR9715739 | Root | 26.072 |
| SRR9715742 | Root | 16.934 |
| SRR9715743 | Root | 19.053 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 7.427 |
| SRR8749028 | MeJA induced 9h | 3.595 |
| SRR8749029 | MeJA induced 9h | 2.996 |
| SRR8749030 | Uninduced | 2.367 |
| SRR8749031 | Uninduced | 1.008 |
| SRR8749032 | Uninduced | 0.869 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 21.876 |
| SRR8400027 | Control - Root | 23.315 |