Gene detail information of Glyur000076s00018607 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT4G00160.1 | 1.00E-20 | F-box/RNI-like/FBD-like domains-containing protein |
| NR | XP_003625380.1 | 8.81E-77 | F-box/FBD/LRR-repeat protein [Medicago truncatula] |
| Swissprot | tr|Q8LF09|FDL23_ARATH | 1.00E-24 | F-box/FBD/LRR-repeat protein At4g00160 |
| trEMBL | tr|G7KXG4|G7KXG4_MEDTR | 3.00E-77 | Cyclin-like F-box protein {ECO:0000313|EMBL:AES81598.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00076 | 193281 | 194584 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000076s00018607.1 | PF07723.8 | LRR_2 | 142 | 167 | 1.40E-05 |
| Glyur000076s00018607.1 | PF08387.5 | FBD | 295 | 344 | 6.00E-13 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 5.423 |
| SRR1783600 | control | 5.153 |
| SRR1783602 | moderate drought stress | 5.226 |
| SRR1811619 | moderate drought stress | 4.984 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 3.894 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 3.508 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 1.335 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 1.238 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 2.291 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 2.470 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 1.232 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 1.272 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 1.235 |
| SRR2868004 | Drought Stress (root) | 0.712 |
| SRR2967015 | Control (root) | 0.969 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 0.866 |
| SRR9715740 | Leaf | 2.278 |
| SRR9715741 | Leaf | 0.116 |
| SRR9715739 | Root | 1.232 |
| SRR9715742 | Root | 0.007 |
| SRR9715743 | Root | 0.063 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 3.405 |
| SRR8749028 | MeJA induced 9h | 1.570 |
| SRR8749029 | MeJA induced 9h | 1.193 |
| SRR8749030 | Uninduced | 0.292 |
| SRR8749031 | Uninduced | 0.011 |
| SRR8749032 | Uninduced | 0.127 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 5.288 |
| SRR8400027 | Control - Root | 3.990 |