Gene detail

Gene detail information of Glyur000076s00018601

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT3G52680.2	1.00E-24	F-box/RNI-like/FBD-like domains-containing protein
NR	XP_003532284.2	4.83E-126	PREDICTED: uncharacterized protein LOC100780535 [Glycine max]
Swissprot	tr\|Q9FM94\|FBD21_ARATH	2.00E-34	FBD-associated F-box protein At5g56370
trEMBL	tr\|A0A072VGV2\|A0A072VGV2_MEDTR	4.00E-95	Cyclin-like F-box protein {ECO:0000313\|EMBL:KEH41042.1}

Sequence

Transcript Sequence

>Glyur000076s00018601.1
CTACTAAATAAAACGCACCACGGATAATTAGGGCTCCTGTACGTATTGAGCAGCTTTGCTTTGGCACAAGCTTCCCGGCAGGGATGTCGTCGTTGGGGCGTTCTATTCCAACGATGGACAGGATCAGTGCCCTAGAGGACTCAGTACTATGCCACATTCTCTCCTTCCTCCCTACAAAATCCGCAGTNGCCACTAGCGTCCTCTCAAAGAGGTGGAAGCCATTGTATCTCTCACTTCTCACCCTCGACTTCGACGAGAACAACTTCCCACCAAGCTATGACTTTCGGCATTCCGTGTACTCACTCTTGCTCTCCCGCGACACCACCGTATCCCTCCGTTCCTTGCGTCTCAAACTTGGCAAATCCTCTAAATGCGACCAGTACGATATCAAGCGATTTGTTCATTTCGCCACACAACGAGGAATCAAAAACCTAACCATTGACCTGTTCTCAACTCTTGTAACATTGCCTCGGTGCGCTCTCGGTGCCAAAACACTCGTGGTTCTCAAGTTGAAGTCACTAACAGTGAATGATCTCCCATACGTCGATTTCCCCTCGCTCAAAACCCTACACTTGGATTGTGTCATTTTCATGAGTTACGAATATCTTGAGAAGCTTCTTTGCATGTGTCCCATTTTAGAGGATTTACAATCAACAGATTTAGACGTTGATGANTACAAAAGGTTTCTTCCACCTGGAGAGGTTAAAATGTTCCCTAATTTGGTCAGAGCAAACATATCTGGTCCACATATTCCTTTCACTTCCCAAATTAATGTAGATTTTCTACAGGAATATACGATGAATGTCGATGCCCTTGACTATGACCTTCCCATGTTTCCCAATCTAATCGACTTGGAGCTTACCTTTGACCGTTACAATTGTTATCGGAGGTGGAAGTGGNTGTTAGAAGTGCTCGGTCATTGTCCCAAGCTTCAAAATCTTACCATTCTTGATCTGAGTGATACGGTCAGTGGAGAATGGGAGGAGCCACAAACTGTTGCCGAATGTCTTTCATCACAACTTAGAACTTGCTCGCTNGCAAATTATAAAGGCGACTGTTGTGAGCTTCAATTTGCAAAATATATTATGCAGAATTCGAAAGTACTACGTAGCATGACAATTCAGAGTAGCTGTGAGGAGCCAAATCCAGATATAGATACATATGAGAAACTCCAAATGCTAATGAAATTATCTCAGTGCCAAAGGGGCTCTGCAACATGTCAACTTTTATTTAACTTTGCTTTTGTACTCGCTTCACCGGCAGGGATGTCGTCGTCGGGGCGGTCAATTCCAACGATGGACAGGATCAGTGCNCTAGAGGACTCAGTTCTATGCCACATTCTCTCCTTCCTCCCTACAAAATCTGCAGTCGCCACTAGCGTCCTCTCAAAAAGGTGGAGGCCACTGTATCTCTCACTTCTCACCCTCGACTTCGACGAGAACAACTTCCCACCAAGCTGTGACTTTCGGCATTCCGTGTACTCACTCTTGCTCTCGCGCGACACCACCGTATCCCTCCGTTCCTTGCGTCTCAAACTAAACAAATCCTCTAAATGCGACAGTTACGATATCAAGCGATTTGTTAATTTCGCCACACAACGAGGAATCGAGAATCTTACCATTGACGTGTTCCGCGGCGGAATCGCGTTGCCTAAGAGCGTTCTNGGCGCCAGTACACTCGTCGTTCTCAAGCTGAAGATGTTAACGGTGAATGATTTTCCCTATGTCGATTTCCCCTCGCTCAAAACCCTACACTTGGATCGTGTCACCTTCGTGANTTACGAATATCTTGAGAAGCTTCTCTATGTGTCTCCTATTTTAGAGGATTTGCAATTAACAGATTTAAAAGTGGTTGATTATAAAAGGTTTCTTCCACATGGAGAGGTTAAAAGGTTCCCGAATTTGGTCAGAGCAAACATTTCTGGTCCACATATTCCTTTCATTTCCCAAACTAATGCAATGTTTCTACAGGAAAATATGATGAATGTCGATGCTCTTGACCACGACCTTCCCATGTTTCCTAATCTAATTGACTTGGAGCTTACCTTTCACCCTAAAAATTGCCTTAGGAGGTGGAAGTGGGTGTTAGAAGTGCTCCAACATTGTCCCAAGCTTCAAAATCTCACCATTTTTGATCTGAGTGATATGGTCATTGGAAAATGGGAGGAGCCGCAAACTGTTGCCGAATGTCTTTCATCACACCTTAGAACTTGCTGCCTTGTAAATTATAAAGGCTGGAATAGTGAGCTTAAATTTGCAAAATATATTATGCAGAATTCGAAAGTACTTCACAGCTTGACAATTAAGAGTACCTGGGATGTAGATCCAGATATAGAGACAGAGGATAAACTCTATATGCTAATGAAATTATCTTTGTGCCAAAGGGGGTCTGCTACCTGTTTGTCAAGTTATGTCTTTTCTCTCTCCCGCACCACGAATATCAGTGGTTTTTTGGTTGCTATTGGGATCTTCGCTATTAATTTAGCTAGCTAA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00076	153682	164568	-

Gene family

Gene family	subfamily
Ubiquitin Family	F-box

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

molecular_function
GO:0005515 protein binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000076s00018601.1	PF00646.28	F-box	14	45	0.00011
Glyur000076s00018601.1	PF07723.8	LRR_2	158	183	6.80E-05
Glyur000076s00018601.1	PF08387.5	FBD	298	347	2.60E-13
Glyur000076s00018601.1	PF00646.28	F-box	408	439	4.70E-05
Glyur000076s00018601.1	PF07723.8	LRR_2	552	573	0.0029
Glyur000076s00018601.1	PF08387.5	FBD	692	741	2.30E-13

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	18.076
SRR1783600	control	18.612
SRR1783602	moderate drought stress	30.559
SRR1811619	moderate drought stress	30.041

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	18.060
DRR006520	Root Summer glycyrrhizin high producing strain	18.238
DRR006521	Root Winter glycyrrhizin high producing strain	21.379
DRR006522	Root Winter glycyrrhizin high producing strain	20.639
DRR006523	Root Summer glycyrrhizin low producing strain	7.743
DRR006524	Root Summer glycyrrhizin low producing strain	8.087
DRR006525	Leaf Summer glycyrrhizin high producing strain	9.183
DRR006526	Leaf Summer glycyrrhizin high producing strain	9.182

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	9.358
SRR2868004	Drought Stress (root)	9.067
SRR2967015	Control (root)	10.132

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	5.305
SRR9715740	Leaf	10.362
SRR9715741	Leaf	4.885
SRR9715739	Root	9.970
SRR9715742	Root	4.528
SRR9715743	Root	5.447

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	16.374
SRR8749028	MeJA induced 9h	12.872
SRR8749029	MeJA induced 9h	8.886
SRR8749030	Uninduced	3.797
SRR8749031	Uninduced	3.385
SRR8749032	Uninduced	3.648

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	31.371
SRR8400027	Control - Root	24.263