Gene detail

Gene detail information of Glyur000075s00007197.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT5G03790.1	1.00E-37	homeobox 51
NR	KEH24094.1	3.03E-103	homeobox leucine zipper protein [Medicago truncatula]
Swissprot	tr\|Q9LZR0\|ATB51_ARATH	8.00E-46	Putative homeobox-leucine zipper protein ATHB-51
trEMBL	tr\|A0A072U315\|A0A072U315_MEDTR	1.00E-103	Homeobox leucine zipper protein {ECO:0000313\|EMBL:KEH24094.1}

Sequence

Transcript Sequence

>Glyur000075s00007197.1
CGTAGTAGAAGCTTTCATCTCGCATAGTAGTAATCACAAATTAAGTCAGAACCATAGTGGCAGTGCCACGCCTCACTGCTGGAACGCTTGCTATAAACCTCTCTATCTCTATCTTCTNCTCTCTGACTCTGACTACTCTACGTGGTCCATCCCAACCGAGCTGGGAAGCTAAGCTATGCTCCCTCTGCTCTGCAGGCCCATATAAGACANAGGAATTTTGGGGATGGATTAACCGAAAGGGAAGAGACAGGNAAAGAGGAAAGTGAAGTGAAGGCCAGAAATGGATTGGAATGANAGCACAGCAAGATCCTTTGTTCCTCGACCAGAGTCCTCCTTGAGCTTCTTCTACAACTATAACAACTGCCCTTATCCAGGAATGGAAGTTAAACAACCGGCAATGGCGGAGACATCACAGAGATTGCTCCCAGCAGCAATGGACCAAATGAACATTAATATTGGAAGCAGAGAGAAGAAGAANAGATTAACAAGCAACCAGATTGAGTCACTGGAGAGGAGTTTCCAAGAGGAAATAAAGTTGGACCCTGAAAGGAAGATGAAGCTTTCCAGGGAGCTGGGGCTCCAGCCTCGCCAAATTGCTGTTTGGTTCCAAAATAGGCGCACGAGGTGGAAGAACAAGCAGCTTGAGAGTTTGTACGATGTCCTCAAACACGAATATGACGTCGTCTCCAAGGAAAAGCAGAAGCTTCAAGAAGAGGTGACGAGGTTGAAGGCAAGGCTAAGAGAGCAAGCTTTTATGACGCAAACATTTGCTGCTGCTGGTGCTGGTGGTGGTTATAACACAGATCAGCATCAGATGTCTGGTGAGGAAACAGTAGAAAGCACATCAGAGGCACTGCGTGGTTCCAACAAGCCACAGCCACAACAAGGAACGAGTAGCATTCATCAGAATCAGCAGGGCACTGCANAGGGCTACAACAACAACAGTTCTAATTTCACTGTGGAGGATTTCAACACGGTTTCAATGCCTCACTGCCACTGGCCTGTGTTGCCTTATTATCCCTGATAAATAATTAATCTGCAATATTGTTAACTTAATTTAGTGTGGTAGCTAGCTAGCTAGGTTTTTCTTTTTCGTGACTGACATTAGGATCCATGCAGACCTGTTTCTGGATGGTAGTTACGAGTTATGACTCAGTACTCACAAAAACAGCTACATATTCAGGGCAGGCTAGCTAAAGTTAACTAGTAGTAGTTTTCCAATCCATTAAAGTCTTACTCTTGCTCCGTACTACTTTTAGATAGGAGGAAAAGGACTTTTGCATTGCATTGCACACTATTTTTTTTACACTTTTCATTACACCCACATTGTTTTACCAAAATG

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00075	334458	337196	+

Gene family

Gene family	subfamily
Transcription Factors Family	HB

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0006355 regulation of transcription, DNA-templated

molecular_function

GO:0003677 DNA binding

GO:0043565 sequence-specific DNA binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000075s00007197.1	PF00046.24	Homeobox	62	118	3.30E-16

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	2.225
SRR1783600	control	2.278
SRR1783602	moderate drought stress	10.515
SRR1811619	moderate drought stress	10.716

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	6.526
DRR006520	Root Summer glycyrrhizin high producing strain	6.258
DRR006521	Root Winter glycyrrhizin high producing strain	40.712
DRR006522	Root Winter glycyrrhizin high producing strain	39.718
DRR006523	Root Summer glycyrrhizin low producing strain	5.759
DRR006524	Root Summer glycyrrhizin low producing strain	5.738
DRR006525	Leaf Summer glycyrrhizin high producing strain	0.138
DRR006526	Leaf Summer glycyrrhizin high producing strain	0.137

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	0.174
SRR2868004	Drought Stress (root)	0.419
SRR2967015	Control (root)	0.322

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	0.515
SRR9715740	Leaf	1.232
SRR9715741	Leaf	0.344
SRR9715739	Root	1.979
SRR9715742	Root	3.338
SRR9715743	Root	2.929

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.262
SRR8749028	MeJA induced 9h	0.000
SRR8749029	MeJA induced 9h	0.000
SRR8749030	Uninduced	0.000
SRR8749031	Uninduced	0.000
SRR8749032	Uninduced	0.000

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	6.329
SRR8400027	Control - Root	6.715