Gene detail information of Glyur000075s00007181 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT3G52960.1 | 2.00E-70 | Thioredoxin superfamily protein |
| NR | XP_004494137.1 | 1.91E-119 | PREDICTED: peroxiredoxin-2E, chloroplastic-like [Cicer arietinum] |
| COG | YP_002129397.1 | 2.00E-52 | peroxiredoxin [Phenylobacterium zucineum HLK1] |
| Swissprot | tr|Q949U7|PRX2E_ARATH | 3.00E-87 | Peroxiredoxin-2E, chloroplastic (Precursor) |
| trEMBL | tr|I1NAI6|I1NAI6_SOYBN | 3.00E-115 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA19G37500.3} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00075 | 254543 | 255217 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000075s00007181.1 | PF08534.5 | Redoxin | 65 | 221 | 9.50E-33 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 113.898 |
| SRR1783600 | control | 111.429 |
| SRR1783602 | moderate drought stress | 102.833 |
| SRR1811619 | moderate drought stress | 99.692 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 80.019 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 80.938 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 31.702 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 30.229 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 65.141 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 62.653 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 213.364 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 214.847 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 151.056 |
| SRR2868004 | Drought Stress (root) | 119.904 |
| SRR2967015 | Control (root) | 103.894 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 226.217 |
| SRR9715740 | Leaf | 222.819 |
| SRR9715741 | Leaf | 174.080 |
| SRR9715739 | Root | 197.975 |
| SRR9715742 | Root | 139.990 |
| SRR9715743 | Root | 147.568 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 89.043 |
| SRR8749028 | MeJA induced 9h | 61.912 |
| SRR8749029 | MeJA induced 9h | 70.027 |
| SRR8749030 | Uninduced | 35.036 |
| SRR8749031 | Uninduced | 15.763 |
| SRR8749032 | Uninduced | 29.591 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 116.903 |
| SRR8400027 | Control - Root | 105.225 |