Gene detail

Gene detail information of Glyur000075s00007175

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT5G04560.1	0	HhH-GPD base excision DNA repair family protein
NR	KHN18729.1	0	Protein ROS1 [Glycine soja]
COG	YP_003322501.1	3.00E-20	HhH-GPD family protein [Thermobaculum terrenum ATCC BAA-798]
Swissprot	tr\|Q9SJQ6\|ROS1_ARATH	0	Protein ROS1
trEMBL	tr\|K7KFY3\|K7KFY3_SOYBN	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA03G34860.3}

Sequence

Transcript Sequence

>Glyur000075s00007175.1
ATGGAGTTTGGTGAAACGGACAAAGTGAAGCTTCAAGTACAGGTTCCATGGATCCCCACAACCCCTTCTAAGTCCATTCTTCCGATCTGCACTTCTGGAGAGCCAAAACAGCTGAGCCCCCATNTCAATGGTGAATTTGCATGTTTTGATTCCTCAGCTAGCACAGGGTTAAACATAAGTCCCCACCACCGACCANCACCTGCGGCTGCAGTAACAAACATTGCCCATGACAATGCCAGAACTCGGGTACAGATATCCTTTGACAACATTTCCAGCTCAAGCAATGGCATTGCTGAACTTTTGGCTCAGGCAAATGCTCCCTCGGCATATTATAATGCAACACATGGATTTTGGAGGGACCAATTTGTTCCTNCTCTGAGCTCACAGTTCAATCAAAACTATGCATTACTCAGCCACCACCATCTCTCTCGTGAGCAACCCTTGATCAATACCATCTNTGACAATTATCAAGATCCTCAGGATACTTTGATCAATCTTGGGACCATGTGGCTCTGTAGGCACAACATCCACCATCATACTCAGCATTTCTTTTTCAGCACATCATACTTGGCTTACTATAACGAGGCCACTTCTCAGGTTGCCCCACCTCCAGAAGATGCTATCACCACAAAATACAGACAAGTTGCAGTGACACAAGTGAATATGGAAGAAAGGGATCAAGGGGCGGAAGAGGAAAATATCCCTGCTGTAGAATCTGCTGCTGTTTCTACACCGTGCAAGGAGAATCACAGCCACGATAAGGAAATAATGCTTGATATTGATCTTAATAAAACACCTCAACCAAAACCAAAAAGAAGAAAGCACCGCCCCAAGGTCATAACAGAAGGCAAACCCAAAAGAACTAGGAAGCCAGTCACCCCAAAGCCTGTTCAATCAAAAGAAAACTCAACTGGCAAGAGGAAGTATGCTGGAAGGAAAGAATTAAACACAATTTCTCCACAAACAGAAGTGACAGGGGAATGGACTAAACCATTGATGCCTGAATCTGGCAAAAAGTCATGTAGAAGGTCCTTAAATTTTGACATAGGAGAACAACCAAGAGATGGAAANTTTGCATGCAGAGAAAATGCAACTACACATTTTGGTGGAGAAATTGGCATAGAGGTCAACNAAACACAGGCTTTAAATAATCACATGCCATTACAAGAAGGCGCACAAGCCTCCACTACCGCTCTTTCCAAAAGCAATTCCCCTGGGGCCAGGCTAAATGCCAACTATGGAGAGAATGGCAGCAAAAGGTGGGGTTGGATGATTGATAAGGATGGACATGAAAGCAGTGCACAAATACTATCAAAATCAGTAGCACAATCAAGTCCAAATGATTCAGACAGCAATAACAGAAAACTTATGACTACAGGATCACAAGTAGTTTGTTCCAAGAGAAAACAACCTGGTACCATCGAAAATGCAGATTGCAGCAGCATTAATCTAATTGGGATGCAATATAATTTAGTCCAGGCATACCCCCCAAAGGATTGGGTTCAGTTTTCAAATGTTCNGAAGAAAAGGAGAAGCCAAAAAGGAAAAATTTCTAACACATTCAATACATCTTCCGTGACTGCTACAAAAGATGCACAACTAGCAACATGCCCTCAAGAAGATGCTAGATCACATCCTTATGCATCAACTTCTTACAGCTGGATTTCTGGTTCTGAATATGAAACAGTGAGGGTCCCAGTCATACTTACGGATACAGATAGAGCTATCCATGATAAATCTCAATCACTTGAGTACAACTTATCTTTAGGGCAAAGGAGGCCAACCAAAAGAAGATCAAGAGTCCCTACCAGAATTCATGATTGTGCTTCACTGACCTTAATCAGAAACTGTGATACCAAAGCAGCTCATACCACAAGACTAGGCAGTTCTGATAGACAAGCATTTGGGGATGCAGAAAGGCCACANACATGCATTGAGGCTTTAGTTGCAGAGATGCGTGCATCACTCACGAAAAAGAAACGGAGTAAAAAAAGTACTCCAGTCAGTTCAGTACATTCTTGTACAAATGAAATGCAACAGCACCATAAATCTGTGTTGGAAGATCACAGCCTGCCCTTGCACAACTCATTAGACGTTGCTTGCGAAGAGATGTGGAGAAACAAACATTCTGTGGATACGTTAACAGAACAATTCAGACACCTAAACATATATAGAGATGCTAGAGAGCTTGTGTTGCATGGGCAGAATGCACTTATCCCTTACAACCAGCAAAATGAAAAACGCAAAGGCCTTGTTCATGAATACGGCACAATCATTCCATTTGAGGTCTCATTTGATCCCATCAAGAAACTCCGCCCACGACCTAAAGTTGACCTTGATGAGGAGACTAATAGAGTGTGGAAGCTTCTGATGTTGGATATAAACAGTCATGGGATTGATGGAACAGATGAAGACAAGGCCAAATGGTGGGAAGAAGAACGAAATGTGTTCCGTGGACGAGCAGACTCATTTATTGCACGGATGCATCTTGTACAAGGAGACAGACGCTTTTCTCAATGGAAGGGATCAGTTGTGGATTCAGTGATTGGAGTTTTCCTCACTCAAAATGTCTCAGACCATCTTTCCAGTTCCGCATTTATGTCCCTTGCTGCTCGATTTCCCCTAAAGTCAAGCGGAACATACCATGAGGAAAGCACAAGCTTGATAGTCAACCAACCACAAGTGCAGATTGTGGAACCAGAAGAAAATGCAAAACTGGACGGAAAAATATTGAATCAATCTGTTCATGAATTGAGTTTTATGACAAAAGACATCATTGACCATTCTGGAGAAAGAGAAGTTGTCGACAGCAATGATTCCTGCAGAACTACAGGTAGCTTGACTAGCTTAACAGGTGAATCAAATTGTAAACTGTTGGAATCAGCTCAAAGACATATTAGGGAACATAATCCAATAGAGTGTGTTAGTCCCATGACTGGGGAAGGGCAAGAAAATTCATGTCATGGGGGTGTTAGGAAAGAGTTAAATGATTTACTTTTATCCGAATGCTCCATCATCACATCTCAAAGATCTGGAGATTTTTCCATTGATCAAAATCCTGAGAAGATAGGATCATTCTCAGATAGCAACTCAGAAGTAGAATATAACATTTTTCATAACAGAACTTCTTTCAGTAAGCTTTTAGAAATGTCAAGTTCAACCATGTTACACGAAGTTGACAGTCAAAGAAGCAATCCAACTGAGTGTTTAAGAGATTCATATGGTCAACTTGTAGCCATGAAGCATGACAAACTGGAAGANAACATGGAAAAATCAAATGTTAACCAAGGATCCTTAGAAACAATCATCATGCAATGCAATGAATATACTTTGAAAATGAGCCCANATTCTGGAGTTCTTGAACTTAACCGCTATGACCCTCTCAAAATTGATGCCTCATCAAGTGGCTCCTCAAAGAATAAAAATGAACATGACAAGAGATCTAGCTCTCCAACAACAGAGTCTGAAAGCCAAGCTGCACTTGCCCATTCTCACAGTATGCTATCTCAACTCCATCTTCAGAAACAAAGTGATCACAAGCAGCACAAAGTTTTCCACACTTCAGGACAAAGTCAAGATATGCAGAAATCAAGGGAATCAGATTTTGGTGACCACAATTATGCCANGAGGAATGAAAACAGTAAGATAGATTCTGCCCCTATAAAATTAAGAGGCAGAGAGCGTGGGAAAGAGAAAAAGGATAACTTTGATTGGGATAGTCTAAGAGTACAGGCACAAGCTAAGGCAGGTAAAAGAGAAAAGACAGAAAGCACCATGGACTCTTTGGATTGGGATGCCGTGAGANGTGCAGATGTCAATGAAATTGCTGATGCAATCAAAGAAAGGGGAATGAACAACATGCTTGCTGAACGTATTAAGAATTTCCTGAATCTATTGGTTGACGTACATGGGGCCATTGATCTCGAGTGGCTGAGAGATGTTCCACCTGACCGAGCAAAAGAATACTTGCTCAGCATAAGGGGATTGGGATTGAAAAGTGTGGAGTGTGTGCGACTCTTAACACTGCACCATCTTGCTTTCCCGGTGGACACAAATGTTGGGCGCATTGCAGTACGATTGGGTTGGGTTCCTCTCCAGCCACTTCCTGAATCACTCCAGTTGCATCTTCTAGAATTGTACCCAGTGTTGGAATCCATACAAAAATATCTCTGGCCCCGGCTGTGCAAGCTAGACCAAAGAACACTGTATGAGCTGCATTACCAGCTGATTACATTTGGAAAGGTCTTCTGTACAAAAAGCAAACCAAATTGTAATGCATGCCCGATGAGAGGGGAATGCAGACACTTTGCAAGTGCTTTTGCGAGTGCGAGGCTTGCCCTGCCAGGACCAGAGCAGAAGAGTATAGTTATCACAACTGGAAACAATGCAACTGATCAGAACCCAACGGTAATCATCAATCAGTTGCCATTGTCTCTCCCTGAAAACACAAACCAAGCAGTAGAGCTTCAACAAACAGAGGTGATCGGGCAACTTGAAACAAAATCTAAAATCGATATCTGCCAACCTATTATTGAAGAGCCAGCAACTCCAGAGCCAGAATGCGCCCAAGTATCAGAAAATGATATAGAGGATGCTTTCTATGAGGAATCGAGTGAAATTCCAACCATCAAACTAGACATAGAAGAGTTCACAATGAATTTACAAAATTATATGCAAGAAAACATGGAACTTCAAGAAGGTGAAATGTCAAAGGCCTTGGTTGCTCTACATCCAGAAGCTGCTTGCATTCCTACACCCAAGCTGAAGAACGTGAGCCGGTTGCGCACAGAGCATTCCGTTTATGAACTCCCAGATTCACATCGTCTTCTGGAAGGGTGGGACAAGCGAGAACCTGATGATCCAGGCAAATACCTTCTAGCAATATGGACTCCAGGTGAGACGGCAAATTCTATACAGCCACCAGAAAGAAAATGCAGCTCTCAGGACTGTGGCCAGCTCTGTAATGAGAACGAATGTTTTTCATGCAACAGTTTCCGTGAAGCAAACTCACAGATAGTTCGAGGCACAATCCTGATACCATGTCGAACAGCTATGAGAGGGAGCTTTCCACTAAATGGCACCTATTTTCAAGTCAATGAGGTTTTCGCAGAGCATGACTCAAGTCTTAACCCAATTAGCGTTCCCCGAAGTTGGATATGGAACCTCAATAGGCGAACAGTATATTTTGGAACCTCCATACCATCCATATTCAAAGGTTTATCAACACAAGAAATTCAACAGTGCTTTTGGAGAGGGTATGTCTGTGTGCGGGGATTTGACAGGCAAACACGAGCACCCCGTCCTCTGATGGCTAGACTACATTTCCCAGTTAGCAAGTTGCCGAGGAACAGGGACAAGGCCAAAAAATACTCTGCATCTGCAAACTCACAAGGATTGAATTTGAAACCAAATCCAGAACAGCCAGAATTGCTTCCCAACATTCACAACCTTCGGGAGAACCNTGGACCCTGAAGAAAAGTCATTGTGTTATTCATGCTGTAATATTATATATAATAACAAGGTCATTGTTAACCAACTTTAATCTCGCCTTGTCATGCTCACGGACTGAGCAGTTTTTTCAGCTTAAGGACCAAGATTGTATCATGGTAACATATAGGCTCTTAGCTTCATGAATAGGAATGTTAGCCTCAGAAACACTCTTCTAATTTGAATTTGATGCACCTCAATTGACCAGTTCCGTTAGCACAATTAATCCGAAATTCACTACTCAGCGTTCAGTTGATGAGATGCCGGAAAAAAAAATGCCGTATTCACTAATACCTTCAAATTCTAAGGGTCTATTTAGGATTGCGCCAGCCTGTGATTTAGTGACGAGAGCACTATAATGCAAATCGTTGACCAATGTTGACAAAATACATATTTAAAANCATATGATGGACAACTAGTAAAAATCAACCCTACTGATAAGTGTAGAAAGGCTTCAGATCAAGAAGCGTACCTATCAAGTCCTAGCTTTCACAGACAGAATTCGAGAAAGTGATTTCCAAAGAAAGACCAGAGAATAATGAGCACGAGGTGGATGCGAGCAGAAGGGCGGGTCGGAGTAGTTGAAAGATATGTGCAGTATATATAGTGCCACTTTTTGCCGCCTTAGCGCCANTTTCATAACTTTTCCCTTTTTTTNTCTTCTTTTTTCCCCATTTTCTTCGTTTATTCAGATTTGATTTCAAATTCAATTTTGCAGATGCAAAATCTTTTTTTAGCCTTATCTCTATTCTTGGACAACTTGCTANCTGNGAAACGTAGTCTAATCATCAGANTACGGTGCTCGTGTTTGCCCGACAAATCCCGCACATAGACCCGCAAGTGCATAGCATTTTCACTAATATGTTTANGTGGGACTCCTTGGGGTTCGGC

Protein Sequence

>Glyur000075s00007175.1
MEFGETDKVKLQVQVPWIPTTPSKSILPICTSGEPKQLSPHXNGEFACFDSSASTGLNISPHHRPXPAAAVTNIAHDNARTRVQISFDNISSSSNGIAELLAQANAPSAYYNATHGFWRDQFVPXLSSQFNQNYALLSHHHLSREQPLINTIXDNYQDPQDTLINLGTMWLCRHNIHHHTQHFFFSTSYLAYYNEATSQVAPPPEDAITTKYRQVAVTQVNMEERDQGAEEENIPAVESAAVSTPCKENHSHDKEIMLDIDLNKTPQPKPKRRKHRPKVITEGKPKRTRKPVTPKPVQSKENSTGKRKYAGRKELNTISPQTEVTGEWTKPLMPESGKKSCRRSLNFDIGEQPRDGXFACRENATTHFGGEIGIEVNXTQALNNHMPLQEGAQASTTALSKSNSPGARLNANYGENGSKRWGWMIDKDGHESSAQILSKSVAQSSPNDSDSNNRKLMTTGSQVVCSKRKQPGTIENADCSSINLIGMQYNLVQAYPPKDWVQFSNVXKKRRSQKGKISNTFNTSSVTATKDAQLATCPQEDARSHPYASTSYSWISGSEYETVRVPVILTDTDRAIHDKSQSLEYNLSLGQRRPTKRRSRVPTRIHDCASLTLIRNCDTKAAHTTRLGSSDRQAFGDAERPXTCIEALVAEMRASLTKKKRSKKSTPVSSVHSCTNEMQQHHKSVLEDHSLPLHNSLDVACEEMWRNKHSVDTLTEQFRHLNIYRDARELVLHGQNALIPYNQQNEKRKGLVHEYGTIIPFEVSFDPIKKLRPRPKVDLDEETNRVWKLLMLDINSHGIDGTDEDKAKWWEEERNVFRGRADSFIARMHLVQGDRRFSQWKGSVVDSVIGVFLTQNVSDHLSSSAFMSLAARFPLKSSGTYHEESTSLIVNQPQVQIVEPEENAKLDGKILNQSVHELSFMTKDIIDHSGEREVVDSNDSCRTTGSLTSLTGESNCKLLESAQRHIREHNPIECVSPMTGEGQENSCHGGVRKELNDLLLSECSIITSQRSGDFSIDQNPEKIGSFSDSNSEVEYNIFHNRTSFSKLLEMSSSTMLHEVDSQRSNPTECLRDSYGQLVAMKHDKLEXNMEKSNVNQGSLETIIMQCNEYTLKMSPXSGVLELNRYDPLKIDASSSGSSKNKNEHDKRSSSPTTESESQAALAHSHSMLSQLHLQKQSDHKQHKVFHTSGQSQDMQKSRESDFGDHNYAXRNENSKIDSAPIKLRGRERGKEKKDNFDWDSLRVQAQAKAGKREKTESTMDSLDWDAVRXADVNEIADAIKERGMNNMLAERIKNFLNLLVDVHGAIDLEWLRDVPPDRAKEYLLSIRGLGLKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYPVLESIQKYLWPRLCKLDQRTLYELHYQLITFGKVFCTKSKPNCNACPMRGECRHFASAFASARLALPGPEQKSIVITTGNNATDQNPTVIINQLPLSLPENTNQAVELQQTEVIGQLETKSKIDICQPIIEEPATPEPECAQVSENDIEDAFYEESSEIPTIKLDIEEFTMNLQNYMQENMELQEGEMSKALVALHPEAACIPTPKLKNVSRLRTEHSVYELPDSHRLLEGWDKREPDDPGKYLLAIWTPGETANSIQPPERKCSSQDCGQLCNENECFSCNSFREANSQIVRGTILIPCRTAMRGSFPLNGTYFQVNEVFAEHDSSLNPISVPRSWIWNLNRRTVYFGTSIPSIFKGLSTQEIQQCFWRGYVCVRGFDRQTRAPRPLMARLHFPVSKLPRNRDKAKKYSASANSQGLNLKPNPEQPELLPNIHNLRENXGP

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00075	214950	226033	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process

GO:0006281 DNA repair

GO:0006284 base-excision repair

molecular_function

GO:0003824 catalytic activity

GO:0051539 4 iron, 4 sulfur cluster binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000075s00007175.1	PF00730.20	HhH-GPD	1260	1380	4.30E-08
Glyur000075s00007175.1	PF15629.1	Perm-CXXC	1641	1672	1.50E-10
Glyur000075s00007175.1	PF15628.1	RRM_DME	1675	1776	5.60E-54
Glyur000075s00007175.2	PF15629.1	Perm-CXXC	350	381	3.50E-11
Glyur000075s00007175.2	PF15628.1	RRM_DME	384	485	1.00E-54

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	5.426
SRR1783600	control	5.236
SRR1783602	moderate drought stress	8.128
SRR1811619	moderate drought stress	7.518

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	5.614
DRR006520	Root Summer glycyrrhizin high producing strain	5.143
DRR006521	Root Winter glycyrrhizin high producing strain	6.655
DRR006522	Root Winter glycyrrhizin high producing strain	6.742
DRR006523	Root Summer glycyrrhizin low producing strain	4.398
DRR006524	Root Summer glycyrrhizin low producing strain	4.450
DRR006525	Leaf Summer glycyrrhizin high producing strain	3.846
DRR006526	Leaf Summer glycyrrhizin high producing strain	3.882

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	15.532
SRR2868004	Drought Stress (root)	21.919
SRR2967015	Control (root)	23.332

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	3.204
SRR9715740	Leaf	2.273
SRR9715741	Leaf	3.536
SRR9715739	Root	0.269
SRR9715742	Root	1.886
SRR9715743	Root	1.906

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	4.743
SRR8749028	MeJA induced 9h	10.932
SRR8749029	MeJA induced 9h	4.084
SRR8749030	Uninduced	10.720
SRR8749031	Uninduced	8.071
SRR8749032	Uninduced	3.828

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	10.138
SRR8400027	Control - Root	12.357