Gene detail

Gene detail information of Glyur000075s00007174.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT2G36480.3	5.00E-70	ENTH/VHS family protein
NR	XP_004494143.1	0	PREDICTED: uncharacterized protein LOC101498250 [Cicer arietinum]
Swissprot	tr\|Q0WPF2\|PCFS4_ARATH	4.00E-57	Polyadenylation and cleavage factor homolog 4 {ECO:0000305}
trEMBL	tr\|G7L500\|G7L500_MEDTR	0	ENTH/VHS-like protein {ECO:0000313\|EMBL:AES81967.2}

Sequence

Transcript Sequence

>Glyur000075s00007174.1
ATTCAANGAAGGTCACAGACTGAGTTCAATGTGTGAAGCGAGCTTCACTCCACACTCGTGCGTTTATTCACACACGTAATCCCCAATCGCAGCCTTCTTATTACATTCAAGCCCCTTCTTCTCTCTCGATCCCTCTTCTCACTTTCTCTCTCTTTTATTTTATTTTTATTTATTATTTTCCCCCCATTCATCCATGCGAATTGGGATTAGGGTTTATCTCAATTCTCATTGTACAATTTCGAATCAGATGTTTTGTTCTAATTTGGTTATTTTTCTCTCTCCGCTCTGGCAATAAAATCTGAGTGAGAAGCAGTAACCGGGATGCTATTTTCCTTGTTGTAAATCGAGTATTGAAAGTGCATTAGNGCTAGGATTAGGGTTTTAGATTCGTCGCATTTGATTTTGATGGACATGGAGAGCACGCGTAGATCGTTGGATAGATCGAGAGAACCTGGCACCAAGAAGCCCCGATTGATCGAAGAGCTCGAACGCGGTTCCAACCCCACTGCACGACCATTTCCTCAGCGACAACCTGGGTCCGGGGTCGTTACAACGTTGTCGTCTGCTGCGAGGTTTCGAGCAAACGACAGAGACTCCGAAAGCAGCGATTCGGGTCGCGGGGGCGGCGGGTACCATCCACAGCCACCGCCGCACCAAGANCTCGTGGCTCAGTATAAGACCGCGCTTGCTGAGCTCACTTTTAACTCGAAACCGATAATTACCAACTTGACTATAATTGCTGGAGAGAACCTCTCTGCTGCCAAAGCAATTGCTGGGACTGTTTGTGCTAACGTGCTNGAGGTTCCAAGTGAACAAAAGCTGCCATCGCTATATCTCTTGGACAGTATTGTTAAGAATATAGGGCGGGATTATATAAAATACTTTGCTGCCAGGCTACCNGAGGTATTCATCAAGGCATACAGACAGGTTGATCCATCTGTCCATACTAGTATGAGGCATCTTTTTGGAACTTGGAGAGGAGTCTTTCCTCCTCAGACCCTTCAGGTAATTGAGAAGGAACTTGGCTTCACTCCTGCAGTCAATGGTTCAGCTTCTGCATCTGCATCTGCTACACTCAGAAGTGATTCTCAGTCACAACGCCCACCTCATAGCATCCATGTGAATCCCAAGTATTTAGAAAGGCAGCGTCTTCAGCAGTCCAGCAGGACTAAAGGAGTAGTTAATGATATGACTGGATCTATTTTAAACACAAATGAGGACTCAGAGAGGCCAGATAGAGCACTGGGTGCTTCACGACCATGGATGGATCCTAGGATTAACATGCATAATAATCAACAAACTCAGAGAGATGCATTTAACGATTCCATTCCTGAAAAGAGTATTGGTGGATCCTATGGAGGCAATGAATATAGTTCTAGTATTACNAGTAATATGGGCTCAGCAGTTGGAAGAACCGGAAGTAGGCTCATTGGTAGTGTTGCCGAGCCCTTATCTGGGCAAAGAAATGGTTTCAATCTCAAGCATAGTTTTTCAAATCATGAAGCACCGAAGTCTATGAGTTTGGATGCACATCGTCAGCCACCACAAACAATTACTAACATAAGGAGCAGTGTGACGTCAAGTAACTGGAAAAACTCTGAGGAAGAGGAGTTCATGTGGGATGAAATGAACTCTGGTTTGACTGATCATGGACCCAATGTCTCTAGCAACTTGAGCACAGACCCATGGATGGCCGATGATGAAAATTTGGAAAGTGAAGATCACCTCCAAATCACGCACCCGATTGGGGCAAGGGTTGATAGAGAAATATCCACTGTGAAGAAACAACTACCTACATCATTATCATGGGAATTACAGAAGCTGCACTCAAGTGATAAGTTGAATCCAAAGCTAGGTCACCCGGAAAGATTTGTTTCAACTCCTAGTGGCTTACCCAGCAATACAAATTCTTCAGCTGTCAGGATGAGGAATCNGTCTTTTATGCCGCATGCCACAATAGGAATGGCCAAAATTATGGGACAACAGCAATTTGTTTCGGGGGAAGCTGAGTCCCCTTCTGGACAGTCACCTTTGCGACAACAGTCTCCATCAATGAGAAATTTGTCCGAGCAAGATTGCTCCCAGACTCTTAAAACATCTCAATTTTTGGGAGGTCTGCAAAGTCAATATATTAGAGACCCCNCACCTGCCCTTCTTCCCAATGTTCAGGTTGGTAACTTGCGAAAATCACAAGAAAAGGACATGCAGGGTCCATTATCTTCTGTAACTTCTTTTCAGCCAAGACTTCAGCNACAGCAGCTGGGCCCTTCTCAGACTGAAGTCAGTGTTAAAACTAAGGAGCCACCCCAGTCTAAAGCTTCTTTAGCCAGAANAACTTCAGAAAAGTCAACCACAAATAGTCTTCCAGCTTCATCTGTGAAGAGTGGAATCATCCCCAACAAAACAATTATCAGTAGTCTGGATGCNAGTATTCTTCCATCTCAACCAGGGGTTCAGCCTACTCGGTCAGGTACTCTGCCAAAGATACCTCAGGGAAAGGCTGGACAGCCACAAAGGGACTCTACCCAACCACCTGCTTCCTCTAATATTAGCAGTGCCTCAGCTCCTAGCTCAAATGCCACCATTAAGAATAGCTTGAATCCAATTTCAAACCTTTTAAGTTCATTAGTTGCAAAAGGTTTGATATCTGCAGAAACAGAGTCAGCAACTCTAGTACCAAGTGAGATGCTGATGCGACCGGAAGACCAAANTGAAAGCATTACTGCCAGTTGCTCTTTGCCAGTTGCTTCAGTTCCTGATTCTGCAGCTGTCCCAGTACCATCTTCCAGAGATGAGTTTGATGATGCTGCCAAAGCCTCTCTTGCCTTGTCTCAAACACCTAGTACAGAGATCAGAGATCTCATTGGCTNTGATTTTAAACCTGATGTAATTCGAGAAATGCATCCACATGTAATCAGGGGATTATTAGATGAACTCCCACATCATTGCAAAATTTGCGGTATTAGGCTTAAACAGCAAGAACAGTTGAATAGACACTTGGAGTGGCATGCTACAAGAGAAAGAGAACAAAATGGTCTGATTATGGCATCAAGAAGATGGTATCNAAAGTCAAATGACTGGATTGCTGGCAAGGCTGAATATCTACCCGAGTCCGAGTTTACTGATTCCGTCGATGTTTATGACAAAAAACCAGACACGAGTCAATTGGATACTATGGTTGTAGCAGATGAAAACCAGTGCTTGTGTGTATTGTGTGGCGAGCTATTTGAAGATGTGTACTGTCAGGAAAGGGATCAGTGGATGTTCAAGGGGGCTGTTTACATGAATAACTCGGATAGCAATAGTGAGGTGGAAAGTAGAAACGTGGGTCCCATCATTCATGCTAGATGCTTATCAGAGAACTCAACATCTAGTGTCATCGATACAGTAAGGCTCATAGTGAATTGAATGGATGTCTTTTAGTTTAACGTTTAAAGCTTCAGTTAGTCTGTTCGGAGTGTGTTCAAATTTTTGGTA

Protein Sequence

>Glyur000075s00007174.1
MDMESTRRSLDRSREPGTKKPRLIEELERGSNPTARPFPQRQPGSGVVTTLSSAARFRANDRDSESSDSGRGGGGYHPQPPPHQXLVAQYKTALAELTFNSKPIITNLTIIAGENLSAAKAIAGTVCANVLEVPSEQKLPSLYLLDSIVKNIGRDYIKYFAARLPEVFIKAYRQVDPSVHTSMRHLFGTWRGVFPPQTLQVIEKELGFTPAVNGSASASASATLRSDSQSQRPPHSIHVNPKYLERQRLQQSSRTKGVVNDMTGSILNTNEDSERPDRALGASRPWMDPRINMHNNQQTQRDAFNDSIPEKSIGGSYGGNEYSSSITSNMGSAVGRTGSRLIGSVAEPLSGQRNGFNLKHSFSNHEAPKSMSLDAHRQPPQTITNIRSSVTSSNWKNSEEEEFMWDEMNSGLTDHGPNVSSNLSTDPWMADDENLESEDHLQITHPIGARVDREISTVKKQLPTSLSWELQKLHSSDKLNPKLGHPERFVSTPSGLPSNTNSSAVRMRNXSFMPHATIGMAKIMGQQQFVSGEAESPSGQSPLRQQSPSMRNLSEQDCSQTLKTSQFLGGLQSQYIRDPXPALLPNVQVGNLRKSQEKDMQGPLSSVTSFQPRLQXQQLGPSQTEVSVKTKEPPQSKASLARXTSEKSTTNSLPASSVKSGIIPNKTIISSLDASILPSQPGVQPTRSGTLPKIPQGKAGQPQRDSTQPPASSNISSASAPSSNATIKNSLNPISNLLSSLVAKGLISAETESATLVPSEMLMRPEDQXESITASCSLPVASVPDSAAVPVPSSRDEFDDAAKASLALSQTPSTEIRDLIGXDFKPDVIREMHPHVIRGLLDELPHHCKICGIRLKQQEQLNRHLEWHATREREQNGLIMASRRWYXKSNDWIAGKAEYLPESEFTDSVDVYDKKPDTSQLDTMVVADENQCLCVLCGELFEDVYCQERDQWMFKGAVYMNNSDSNSEVESRNVGPIIHARCLSENSTSSVIDTVRLIVN

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00075	206585	212829	-

Gene family

Gene family	subfamily
Transcription Factors Family	C2H2

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

molecular_function
GO:0046872 metal ion binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000075s00007174.1	PF04818.8	CTD_bind	138	195	8.20E-10

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	21.774
SRR1783600	control	21.946
SRR1783602	moderate drought stress	24.353
SRR1811619	moderate drought stress	23.940

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	21.954
DRR006520	Root Summer glycyrrhizin high producing strain	21.594
DRR006521	Root Winter glycyrrhizin high producing strain	18.867
DRR006522	Root Winter glycyrrhizin high producing strain	18.286
DRR006523	Root Summer glycyrrhizin low producing strain	21.063
DRR006524	Root Summer glycyrrhizin low producing strain	20.926
DRR006525	Leaf Summer glycyrrhizin high producing strain	14.030
DRR006526	Leaf Summer glycyrrhizin high producing strain	13.830

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	14.574
SRR2868004	Drought Stress (root)	14.660
SRR2967015	Control (root)	15.817

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	14.072
SRR9715740	Leaf	15.241
SRR9715741	Leaf	17.616
SRR9715739	Root	6.538
SRR9715742	Root	22.636
SRR9715743	Root	20.036

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	24.978
SRR8749028	MeJA induced 9h	27.108
SRR8749029	MeJA induced 9h	22.686
SRR8749030	Uninduced	19.120
SRR8749031	Uninduced	18.180
SRR8749032	Uninduced	14.728

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	16.148
SRR8400027	Control - Root	15.472