Gene detail

Gene detail information of Glyur000075s00007173

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT5G03700.1	3.00E-127	D-mannose binding lectin protein with Apple-like carbohydrate-binding domain
NR	XP_004494144.1	0	PREDICTED: PAN domain-containing protein At5g03700-like [Cicer arietinum]
Swissprot	tr\|Q9LZR8\|Y5370_ARATH	9.00E-168	PAN domain-containing protein At5g03700 (Precursor)
trEMBL	tr\|K7MZ69\|K7MZ69_SOYBN	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA19G37621.1}

Sequence

Transcript Sequence

>Glyur000075s00007173.1
ATGTTCAACATGTCTGCAACTCATCAGCTCCAATTTACAATCATTCTCGTTCTGTCCCTCCAGTCCACGTTGACATGTTTCGCAGCCACTCTTATTCCACAAGAGCTTCTAAAAGGCTTCTCGGCGGTTCCACTCTCAACAACGACGTCGTCGTTTCAGGCAGTTCTGAGCGACCCAACGGGAAACTTCTCTCTGGGGTTCCTCCGCCGCCAGAACCAAAACGATCTGGAACTAGCCGTCGTGCACGTGGCTTCCTCTGAGCCATTCTGGGTCGCCAACACAACACGCCCCGCATCCTGGGCCGAAACCACGCGCCTCTTCTTCAACGGCAGCCTGGTGTTGTNGGACCCCCAAACTGGCGCGTCGTGGTCAACCGCCACAAACGGCGACCGCGTGGTTCTCCTCAACACCTCCAACTTGCAGGTTCAAAACAACAAAGGCTCTCCCCTCTGGGAGAGTTTTCATTTTNCCACAAATACCCTCGTCCAGGACCAGAATTTCACCGCCAACATGTCTCTGTTGTCGCGGCCCACTGGGCTTTACTCGTTGCGGTTAGGCGACACTTTCATGGGCCTATACGCAAATTACGGCGAANAATTAGGAGGACTATACTGGAAACACACGGCAATGGAAGCAAAAGCTAAAATAGAGGAAGGAAAGGGACCCCTTCACGCGCGAGTCAACACGGAGGGTTATCTCGGCATGTACCAAACAAGCGCCAAGCCTGTGGACGTTCAGAAGTTCAACAGTTTCCAACAAACCTCCACAACGTCGTCNTTTCTCTTGGTGCGGTTAGAACCGGACGGGAATCTCAAGGGGTATTACTGGGATGCCTCCCGGTCCAGCTGGCTGCTTAACTACCAGGCCATCACCGAAACATGTGACCTGCCCAACCCCTGCGGTTCGTACGGTTTGTGCACGCCCGGAGGGTCTGGATGCTCCTGTTTGGATAACCGAACCCGGTTCGAACCGGATGGTGGGTGTTTGGCTACNGGAGATGGTGATGGTAGTGGTGACTTGTGCGGGGAAAAAGGGATTGGTGGAACTGGAGAGAGTTACCGGGTGCTGAGAAGGACCGGTGTGGACCCACCNCATAAGGAGCTACTTCATCACGTAACGACGTCGTCTCTGGCGGAGTGCGAGGGCTTTTGCGAGAAAAACTGTAGCTGTTGGGGAGCGTTGTATTACAACGCCACCGGATTTTGTTACGTTTTGGACTATCCGGTTCGGACCATGTTGGGTACCGGGGATGAGTCCAAGGTGGGTTATTTTAAGGTGCGGAAAGGTGCAGCACGGGAAAGGAATCGNGTTTGGGTTNGGGTTGGGATTGTGGTNGCGGTTTTGGTTGGGACTGTTGTTCTTGGGGTTGGGTTTTGCGGCGTGATGAGATGGAGGAGGAGGAAAGGAGTGAATGGGATCCTGAAGGAGGAGAATGGGGCTTCGCCCGGCCCGTATAGGAATCTCGGATCCGCTAGTTTTAGATCCATTGAAATGTCAGTGCAGTACTAA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00075	199964	201472	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0048544 recognition of pollen

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000075s00007173.1	PF01453.19	B_lectin	88	169	2.30E-11
Glyur000075s00007173.1	PF00954.15	S_locus_glycop	250	317	2.70E-08

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	1.605
SRR1783600	control	1.580
SRR1783602	moderate drought stress	3.166
SRR1811619	moderate drought stress	2.971

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	4.761
DRR006520	Root Summer glycyrrhizin high producing strain	4.728
DRR006521	Root Winter glycyrrhizin high producing strain	23.094
DRR006522	Root Winter glycyrrhizin high producing strain	21.953
DRR006523	Root Summer glycyrrhizin low producing strain	12.373
DRR006524	Root Summer glycyrrhizin low producing strain	12.264
DRR006525	Leaf Summer glycyrrhizin high producing strain	6.340
DRR006526	Leaf Summer glycyrrhizin high producing strain	6.568

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	68.210
SRR2868004	Drought Stress (root)	82.799
SRR2967015	Control (root)	101.761

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	41.632
SRR9715740	Leaf	32.989
SRR9715741	Leaf	71.725
SRR9715739	Root	24.024
SRR9715742	Root	51.726
SRR9715743	Root	43.564

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	148.166
SRR8749028	MeJA induced 9h	293.818
SRR8749029	MeJA induced 9h	210.813
SRR8749030	Uninduced	31.759
SRR8749031	Uninduced	68.133
SRR8749032	Uninduced	201.137

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	36.883
SRR8400027	Control - Root	28.202