Gene detail

Gene detail information of Glyur000075s00007171.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT2G36460.1	0	Aldolase superfamily protein
NR	XP_003521445.1	0	PREDICTED: fructose-bisphosphate aldolase, cytoplasmic isozyme [Glycine max]
COG	YP_002602040.1	6.00E-123	hypothetical protein HRM2_07620 [Desulfobacterium autotrophicum HRM2]
Swissprot	tr\|O65735\|ALF_CICAR	0	Fructose-bisphosphate aldolase, cytoplasmic isozyme
trEMBL	tr\|I1JPX8\|I1JPX8_SOYBN	0	Fructose-bisphosphate aldolase {ECO:0000256\|RuleBase:RU003994}

Sequence

Transcript Sequence

>Glyur000075s00007171.1
CACCTACCTCCTTTCCACGCTACTACCATAAATATCCATTCCACTCCCTCCTTTTCTTCTCACTCCCTGTCTTCTCACGCCACCCTTGTCGTCTTCTCTCGAAATCTCACTACCGTAGCCACCATGTCTTCCTTCAAGAGCAAATACCAAGATGAACTAATTGCCAATGCTGCATACATTGGCAGCCCAGGAAAGGGTATTCTTGCTGCTGATGAGTCAACTGGAACAATTGGAAAGCGTTTGGCTAGCATTAAAGTTGAGAATGTTGAAACAAACAGGCGCGCTCTCCGTGAACTCCTATTCACAACACCTGGTGCTTTTGAGTGCCTCAGTGGTGTGATCTTGTTTGAGGAGACCCTATACCAAAAGACAGCTGCAGGAAAACCCTTTGTAGAGTTGTTGAAGGAAGGTGGAGTTCTTCCTGGTATTAAGGTTGACAAGGGCACTGTAGAGCTTGCTGGAACCAATGGGGAAACCACCACCCAGGGTTTGGATGGCCTTGGCCAGCGTTGCCAAAAGTACTATGAAGCCGGTGCCCGATTTGCCAAGTGGCGTGCTGTCCTCAAGATCGGCCCAAATGAGCCATCTGAGCTGTCTATCCACGAGAATGCCTACGGTCTAGCTCGTTACGCTGCCATATGCCAGGAGAATGGCCTGGTTCCTATAGTGGAGCCTGAAATCCTGGTGGATGGACCTCATGACATCAACAAGTGTGCCGAGGTGACCGAACGTGTCCTTGCCGCATGCTACAAGGCTCTAAATGATCACCATGTTCTGCTTGAGGGAACTCTTTTGAAGCCCAACATGGTGACTCCGGGTTCAGAGTCTCCAAAGGTCGCACCAGAGGTGATAGCCGAACATACCGTTAGAGCTTTGCAGCGAACCGTTCCTGCCGCAGTTCCTGCTGTGGTGTTCTTGTCTGGTGGGCAGAGTGAGGAGGAGGCAACCCTCAACCTCAATGCCATGAACAAGTTGAAGGGAAAGAAGCCATGGGCCCTTTCTTTCTCTTTTGGAAGAGCACTTCAGCAGAGCACTCTTAAGGCATGGTCTGGGAAGGATGAAAACATTAAGAAGGCCCAAGATACATTCATTGTTAGGTGCAGGGCAAACTCACAAGCAACCCTGGGAACCTACAAAGGCGATGCTACCCTTGCTGAGGGTGCCTCTGAGTCTCTCCATGTCAAGGACTACAAATACTAAATGGTTGTGAGCTTCTTTTGGAGAGTTTTTTGCATTAACATTTAGATGGCCCTTTTTACATTCTCGGTTATAAGAGCTTCATTGATTGAAGAATAATAGCTCCAGGCTACACTGGCTTGGCATCGGCGCTCTTCCACTTCAGTTTCCCTTCGATTTTCTCTGATTTGAGTTTTGCGCTCTTTTATGAATAAGTGTCATTTCTTGTTTCAATGCAATTTGGATATGAAAAGAACATTTTGCTAGCAGCATATGCATAGAGCTTTGCCCGTGTCATTATTTGTATATTTTTGCTAACATTAAGTAGCTGAATTTTTATTTGATTGCCCATAGANTAGTTAATATTTTTGGTCTAGTCTACTAATCAACTTTAACAAGACATCAATTTATAAAGGAAGC

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00075	180094	183118	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
K01623	ALDO	EC:4.1.2.13	Carbon metabolism	map01200
			Biosynthesis of amino acids	map01230
			Glycolysis / Gluconeogenesis	map00010
			Pentose phosphate pathway	map00030
			Fructose and mannose metabolism	map00051
			Carbon fixation in photosynthetic organisms	map00710
			Methane metabolism	map00680

Gene Ontology

biological_process
GO:0006096 glycolytic process

molecular_function

GO:0003824 catalytic activity

GO:0004332 fructose-bisphosphate aldolase activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000075s00007171.1	PF00274.14	Glycolytic	11	358	1.80E-172

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	23.720
SRR1783600	control	23.955
SRR1783602	moderate drought stress	22.572
SRR1811619	moderate drought stress	22.246

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	50.820
DRR006520	Root Summer glycyrrhizin high producing strain	50.046
DRR006521	Root Winter glycyrrhizin high producing strain	102.400
DRR006522	Root Winter glycyrrhizin high producing strain	100.112
DRR006523	Root Summer glycyrrhizin low producing strain	49.629
DRR006524	Root Summer glycyrrhizin low producing strain	49.306
DRR006525	Leaf Summer glycyrrhizin high producing strain	44.351
DRR006526	Leaf Summer glycyrrhizin high producing strain	44.356

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	102.164
SRR2868004	Drought Stress (root)	53.787
SRR2967015	Control (root)	51.473

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	52.207
SRR9715740	Leaf	34.685
SRR9715741	Leaf	47.189
SRR9715739	Root	36.199
SRR9715742	Root	45.130
SRR9715743	Root	41.975

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	35.114
SRR8749028	MeJA induced 9h	49.900
SRR8749029	MeJA induced 9h	97.595
SRR8749030	Uninduced	25.189
SRR8749031	Uninduced	33.920
SRR8749032	Uninduced	118.083

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	41.445
SRR8400027	Control - Root	27.381