Gene detail information of Glyur000075s00007170 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT5G03680.1 | 1.00E-77 | Duplicated homeodomain-like superfamily protein |
| NR | XP_003553586.1 | 0 | PREDICTED: trihelix transcription factor PTL-like [Glycine max] |
| Swissprot | tr|Q9LZS0|PTL_ARATH | 1.00E-126 | Trihelix transcription factor PTL |
| trEMBL | tr|I1NAJ9|I1NAJ9_SOYBN | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA19G37660.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00075 | 172613 | 175482 | + |
Gene family
| Gene family | subfamily |
|---|---|
| Transcription Factors Family | Trihelix |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000075s00007170.1 | PF13837.1 | Myb_DNA-bind_4 | 145 | 231 | 4.40E-21 |
| Glyur000075s00007170.1 | PF13837.1 | Myb_DNA-bind_4 | 458 | 526 | 5.20E-08 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 24.556 |
| SRR1783600 | control | 25.590 |
| SRR1783602 | moderate drought stress | 42.462 |
| SRR1811619 | moderate drought stress | 42.367 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 76.488 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 75.365 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 8.707 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 8.525 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 93.959 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 94.865 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 3.032 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 3.158 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 0.871 |
| SRR2868004 | Drought Stress (root) | 0.687 |
| SRR2967015 | Control (root) | 1.442 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 4.290 |
| SRR9715740 | Leaf | 2.154 |
| SRR9715741 | Leaf | 2.127 |
| SRR9715739 | Root | 6.413 |
| SRR9715742 | Root | 19.878 |
| SRR9715743 | Root | 16.135 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 48.375 |
| SRR8749028 | MeJA induced 9h | 44.512 |
| SRR8749029 | MeJA induced 9h | 34.801 |
| SRR8749030 | Uninduced | 30.322 |
| SRR8749031 | Uninduced | 4.639 |
| SRR8749032 | Uninduced | 5.547 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 7.909 |
| SRR8400027 | Control - Root | 13.428 |