Gene detail

Gene detail information of Glyur000075s00007158.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT3G52910.1	3.00E-43	growth-regulating factor 4
NR	XP_007162865.1	5.80E-166	hypothetical protein PHAVU_001G187500g [Phaseolus vulgaris]
Swissprot	tr\|Q8L8A7\|GRF4_ARATH	3.00E-65	Growth-regulating factor 4
trEMBL	tr\|V7CXL5\|V7CXL5_PHAVU	2.00E-166	Uncharacterized protein {ECO:0000313\|EMBL:ESW34859.1}

Sequence

Transcript Sequence

>Glyur000075s00007158.1
CCACTGGCTCCAAAACAAACTTTGCAGGCTTTGCTGTCAGAATCCCTCTCTCTCTATTTCTCTCTCACTCTCTCTCACACACACAGATGAGGTATCTGCCAAAGATATAAAGGAACCCACAGAGGACTCTGCAAAAGCTCTTTAACATACTTGGNCTCTTTACACATCCAACACACCTAACCAAGTTAATTAGCCAGACTTAAAATAAAAGCACACAACCAAACCTGAAAGCCTCTCTCTCTCTCCATGGACTTTCATCTGAAGCAATGGAGAAACCAGCATGAGTCAGAGGAACAACATTCTACAAAGATGCCAAAACTTCACCCTGAATCCCATCACCACCAACACCAACAATCATCTGNCTCTGCTCTCCCTTTGTTTGTACCTGAACCCAACAGCAAAGTCAGCACCTTGTCAGATTCACCATTAGCACCACCCACCAACAGATTTCCCAGGATGGGAAGCCATTTCAGTTTGTCTCAGTGGCAGGAGCTTGAGTTGCAGGCTCTGATATTCAGGCACATGTTGGCCGTGTTACAATCAGGGTATTGGGGAAGAGCANCCATGGATCCAGAGCCTGGCCGTTGTCGGAGAACCGACGGCAAAAAGTGGCGGTGCTCGAGGGACGTGGTGGCCGGACAAAAGTACTGTGAGCGCCACATGCATCGTGGTCGAAACCGTTCAAGAAAGCCTGTGGAACTACCCACACCAACTAGTGCCGGTGGTGGTGGTGGATCTTTTGCTGCTTCATCCTCCATTTCTTCACAGCCTCTTGCTACTGCCTCACTCAAATCCCCTTTTGATCTCATGGGTTCATTGACATTTAAAAAAGTGAGTTTTTCCACTGGGACCAAGAATGAGGACAAGANCTTGTTTGAAAGCAAAGATCATGTGGGTGGGGATGGGAGATCAGGTGGACATATGCTGAGGCATTTCTTTGATGATTGGCCAAGATCACTGCAAGAGCCTGACAACGCTGAAAACAATGGTACTAGTGGACGAAGGATGAACTCGGCCACATGCCTCTCTATTTCAATGCCAGGGAATACTACTTCGTCGGATGTGTCATTGAANCTGTCCACTGGTTATGGAGGAGAGGAGCACCCGTGCCCGAGAAGTGATCAGAATGTGAACAACAACCTTGAAGCAGAGCAGCAGCAGCAGCAGCAACTGCAATTGAACTGGGCCGGAGGATGGGCTTCGGCTAATCAAATGGGAGGACCACTTGCTGAGGCACTTAGATCATCCACTTCANCTTCCTCACCCACTAGTGTTCTACATCAGTTGCCTCGTAGTTCTGGTTCTGAGACCAGCTATATTATAGCACCTAAGTTTGGTGCAATTGGTGCCTCTAATTAACCTCCGCTTTTCTTTTCTTTTTGGGTTGCTTTCTTCTTTTGGAGCTTTCTTGGTCTTGGACCACGGACATGTTGCTTTCTTGGTCTTGGACCACGGACATGTTTTTTGTATCAAGCCTATGGACGGACTACGTTTGTTGTTATTGGGCAATGGAAAGCGATGTGGATGGATACGTTGCCTTGGTGCGAGGATCCTTTTGTTCCAAGTGATTTAAGTGATACTAAGCTGCCCCATCAACGTTTCAGTATCCTTCTAGTTACNTTACTTTATTTCCTAAACATCGCTAATATTTGCTAGCTAGTCCTATATTCACGAAGGGAATGATGGATTGTAGGAAAGATAATTTACA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00075	95010	98487	-

Gene family

Gene family	subfamily
Transcription Factors Family	GRF

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0006355 regulation of transcription, DNA-templated

cellular_component
GO:0005634 nucleus

molecular_function

GO:0005524 ATP binding

GO:0016818 hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000075s00007158.1	PF08880.6	QLQ	73	95	8.70E-07
Glyur000075s00007158.1	PF08879.5	WRC	108	151	1.40E-23

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	0.207
SRR1783600	control	0.230
SRR1783602	moderate drought stress	0.236
SRR1811619	moderate drought stress	0.256

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	0.049
DRR006520	Root Summer glycyrrhizin high producing strain	0.000
DRR006521	Root Winter glycyrrhizin high producing strain	0.196
DRR006522	Root Winter glycyrrhizin high producing strain	0.255
DRR006523	Root Summer glycyrrhizin low producing strain	0.000
DRR006524	Root Summer glycyrrhizin low producing strain	0.089
DRR006525	Leaf Summer glycyrrhizin high producing strain	3.385
DRR006526	Leaf Summer glycyrrhizin high producing strain	3.594

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	8.986
SRR2868004	Drought Stress (root)	6.580
SRR2967015	Control (root)	8.802

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	5.104
SRR9715740	Leaf	4.622
SRR9715741	Leaf	3.269
SRR9715739	Root	0.147
SRR9715742	Root	1.738
SRR9715743	Root	1.425

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.039
SRR8749028	MeJA induced 9h	0.000
SRR8749029	MeJA induced 9h	0.000
SRR8749030	Uninduced	0.000
SRR8749031	Uninduced	0.000
SRR8749032	Uninduced	0.000

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	1.031
SRR8400027	Control - Root	1.783