Gene detail

Gene detail information of Glyur000075s00007150.1

Functional Annotation

Database	Orthologs	Annotation
TAIR	AT2G36370.1	ubiquitin-protein ligases
NR	XP_004494153.1	PREDICTED: BTB/POZ domain-containing protein FBL11-like [Cicer arietinum]
Swissprot	tr\|Q8S8F2\|FBL11_ARATH	BTB/POZ domain-containing protein FBL11
trEMBL	tr\|G7L600\|G7L600_MEDTR	Ubiquitin-protein ligase {ECO:0000313\|EMBL:AES81997.2}

Sequence

Transcript Sequence

>Glyur000075s00007150.1
CAAACAATGCGTAATAAGCGATAAATTAAAGATAAGGGAGACTGAGTGAGTCACGGAATCCAGAATCANTGAGATTCATTAGACGACTGACGATTCGACTGTGATATATGGTGTCGTTTGGTCCCGCCACNACCACAAGAGCAAAGCAGCAGCGTCGTTTATAACCCTGGTTGTTGTGAACTTAACAAACTAGCAATAGGAGCCACAGTACTAGTGACTTGTCCCTGCTATGGAGGTCTCAGACGACGATGAGCACGTTATCCTGGTTTGCACAAACCCTGATCCAATTGAAACAACGGATNCCCTAAACCAAGAGATTCTCGTGTTGTCCACCACTGATAGTGATATCCTCACTTGGGATTTGCCAACGATTCTCANTTCTCAGACGATCAAAGTTAAGGCACATCGCAATAGGCTCATTGAACAATCTTTGTATTTCCGAGGCCTCCTCAGCGGGAGCTTCAGTGAATCGTGCTTGGGCTCTATCACTGTCAAGTGGAACGTGCGTGTGTTTATGCAAATCCTGAAGCATATGTGTGGCTGCCCATTGGATATTACGACGGAAAATGTACTCTCTCTTTATGAGGGTGCACTTTATTTTGGAGTGGAAACACTTCTCTTAAAGTGTGAGACCTGGTTTTCTGAAGTATTCTCACCCAAAGGATTTCAATTAACACAAATACAAATCGAGGATCTGATCCAAATTTGGAAATTTGGCTTGGATCGTGCAAGTGACTTTATCATGCACTTATGTGTGGGCTACCTAGCAAGAAATTTTATGTGGGCAAGGCATAGCAATTTTTTTGGAAAAATTCCATACGACCTGCTGTTATCTTCAGTAAAGCACCCTCACTTGACTGTTGACAGTGAGATGCATCTTTCTGATGCTCTTCTTCTTTGGCTTGAAAGTAACATGGAAAATTTGGAGAGGCAGAGCGAAGCTGAAGACAACTGCAATGGAATTTTAAAACAAATTCGCGTGGGCCTTTTGCCTTTGTGGTTTGCTGCAGGAAAAAGAAACTCTCTTTATTTTAGGCAGCTGGCTGAGGAAAGCCTTGATTTAATTTTCAGAGCACTGAATATTTTACCTATGGGTTCACTAGAAAATTTCGCGTATAGTGACTTGCAACATCTCAGGATCCGACTTACCGAATATTCAAAGAAAGTGGACCTTTCCAATTGTCCGCAAATAACATCTGCAATACTGCTTCTGTCTCTCATCCCTTCATCATATCTAATGGATCCCATGCGAAAGAAGATTATAGAACAATTCTTTATTAATTCTGGACATCCTATAAGAGAGAAATGTGCATTCCAACAAAAACTGTTAGAAACCTTTACCTTTGAAGCAGTTCAGGAGGTGGATATCTCGAAGTGTCGAAGATTGCTTATTGAACATGCTGTTGATTGCTTCAGCCAATCCTTCCCTTCTTTAAGAATATTGAAAGCAGCTTATCTTTTGAATATCAGGACAACCAGTTTCCTTCAATTATTAGAGAAGTGCTCTTTGGTCTGCGAAATTGACTTGACTGTTGATGTTACTCCACTAATTCCAGCATCAGTTACAGTTTTATCCTCTAGTCCNGCTGTGATACCACTGGTACCAGATAAGGCCTCTAGTCTTAACTATAAAGCAGTGGAAACCATGTCATTTCATGAATCTAGACCTCTACTTTCTAATGTTACAAAACTCACATTGGAAGGAAGAACTGATGTCAGTGATTTGGGTCTCCAGTATATCTCCAAGTTCTGTATTTCATTGTCTCACCTGAATATTAAAGGATGCATTTCTGTCACTGATATTGGGATATCAGATCTCATATGCAGATACAAGCATTTGAATTATGTGGTGTCTAATCTTCAATCACTGCATGTGGGTGGCTGCATAGGTATTTCTGAGTCATCTCTACAAGAACTTATGTCTCAAACACAAGTTTTAAAGAGTTTATGCCTGAGAGGGACTGATCTGATTTCTGAAGCTGCATTAAGTTATGTTATTAACGGAAATCGAAGTTTGAAGTGTCTGAAAGCAAGGGGTTGTAGAAATTTGTTTCAAGGAGACAGATTTATTGAAAGGAGAGAATCTAGCTTTTCCTATTTGCATGAAGAACTACATGCCAAGTTAGGAAAGAAGTGTAGATTGGAAGAAATTGAATTTGGTTGGGGTTTTTCTTCCTTCTCTCTAAATGCTCTGGAACCTGCACTGATGTCATTAAAGACTATCAATATAGGTTTAGGTGGAATATGCATTGAGACAATTACCTGCAATCTGTCCCTTGTAATATCTGATATCATTGTGACGAAATTGGTTACATCCTTGATAAACTTGCAAGTCTTAGCTCTGTGCTATTGTTTTGGTGATATATCCATGTCAAGCTTCCAATTCCCCATGCAAAATCTAAGAAGGTTGAGGCTTGAAAGAGTAACNCCATGGATGACCAATGGTGATTTAATTATTCTAACTCAAAACTGCAGAAATTTGGTTGAGCTTTCATTGCTGGGATGTCCTCTTCTTAACTCAGATTCTCAACAGATAATTTCACGTGGATGGCCAGGCTTGGTCTCTATGCATCTAGAGGGCCCTGGGCTAGAAAGAAACTTCATTTTTCATGCTGCTTCAGAGTTGCCATTGCTTCGAAAATTGTCACTGGATATATGTGATGCAAGCGAAGGTGATTTTGACATTCCAAATTATGATGACAGAAACTTTTTGAGTACCCTGAAGATAGCAAGATGCAAATCTCAAAGATGTGCATTTAATCTCCCAGCCCCTTCCTCAGGGGGTCGTAGAAGGTCGGTGCATGTCGAAACGCTGGTGCTTGTGTGGAACAGCAGAGATCTCATCAGAACAGTGGTGAAGGAAAGGCTTTAGTAAATGCTTGTCTGGGCATTAATTAGAAAATTGTGGATGGTAAATCCTAACCGATAAATCTTTCCAGATGTAGTGAACGCTTTTTTTTTTTTTGGTCAACGTAGTGAACGCTTTTCAAAGAGGGAAATTGGTTCCATTATGAAAAGTTGCTAATGAGTTGGTTTGATTGGGCTTTGAGAGAGAAAAAAATTAGCTAATCATATTTAATTGATTAGGTTTGGTTAATTGAGTTAAAAGATATTGTTTCGACAAAAAAAAATTGTTAATTTTTAAAATTTATTCTAACATAACCACCACCACCTCCACCATGTTTTACTTATGGGTTTTTTCTCCATAAAATGCAAGTTTTTGTATAAGGATAAGCTTTTGAAGTTAACATAATTGCAAATAGTCCCAAATTTCTTTTTCAACTTTCTCATATTTTCTCTAGAAGATAGGGGCAGCAATTGATCATCAGATAACCCATGAATTGGGAATAANAACTGAAATTGAAGAAAAGGCAACGACTCAGATCAGATTTTATTTTTGGGTCAAATGACTCAGATCAGATTGAGGGGAGAATCAGTGATCCAAATGCTCAAAAATAGGTAAAATCCACTACTTGGTAGATAAATCAGAAGGAAGATCCGTGTCCTAAATAAGAAGCAATGAAAGGCTTGGAAAGAAAGTAGATTGAGAAAACCTATGAGATGACCAACATTAAAACAAATAAATCGCCAANATGGGAACCCTATGGGTGCCCAAATTGTTCATCTTGGTTGTTCCTTGTTCAGTTGTTCCTTGTTTCCCCGTTTTCTTATACTCATTTGTGTGTGGTTTCTGGTGACACTGGTTCTGAGCTCTCACTTCTCCTCTGTGGCTTTCAAGAACAAGCCCAC

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00075	21656	33012	+

Gene family

Gene family	subfamily
Ubiquitin Family	BTB

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

molecular_function
GO:0005515 protein binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000075s00007150.1	PF00651.26	BTB	49	135	2.00E-05
Glyur000075s00007150.1	PF07707.10	BACK	157	258	3.30E-06

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	3.984
SRR1783600	control	3.885
SRR1783602	moderate drought stress	5.908
SRR1811619	moderate drought stress	6.040

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	6.423
DRR006520	Root Summer glycyrrhizin high producing strain	6.404
DRR006521	Root Winter glycyrrhizin high producing strain	7.268
DRR006522	Root Winter glycyrrhizin high producing strain	7.320
DRR006523	Root Summer glycyrrhizin low producing strain	5.204
DRR006524	Root Summer glycyrrhizin low producing strain	5.186
DRR006525	Leaf Summer glycyrrhizin high producing strain	4.512
DRR006526	Leaf Summer glycyrrhizin high producing strain	4.469

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	9.633
SRR2868004	Drought Stress (root)	15.756
SRR2967015	Control (root)	18.607

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	9.044
SRR9715740	Leaf	11.304
SRR9715741	Leaf	11.401
SRR9715739	Root	0.874
SRR9715742	Root	4.918
SRR9715743	Root	3.913

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	3.424
SRR8749028	MeJA induced 9h	6.414
SRR8749029	MeJA induced 9h	2.400
SRR8749030	Uninduced	2.947
SRR8749031	Uninduced	1.660
SRR8749032	Uninduced	2.045

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	11.905
SRR8400027	Control - Root	11.438