Gene detail information of Glyur000074s00005584 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT5G42860.1 | 3.00E-75 | |
| NR | KHN44600.1 | 1.91E-155 | hypothetical protein glysoja_027211 [Glycine soja] |
| trEMBL | tr|G7LCF7|G7LCF7_MEDTR | 2.00E-155 | Late embryogenesis abundant protein {ECO:0000313|EMBL:AET05524.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00074 | 368449 | 370694 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000074s00005584.1 | PF03168.8 | LEA_2 | 173 | 277 | 1.10E-06 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 16.380 |
| SRR1783600 | control | 16.435 |
| SRR1783602 | moderate drought stress | 6.774 |
| SRR1811619 | moderate drought stress | 6.613 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 12.188 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 11.352 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 5.904 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 5.411 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 29.861 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 31.158 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 4.144 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 4.088 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 40.883 |
| SRR2868004 | Drought Stress (root) | 36.058 |
| SRR2967015 | Control (root) | 33.208 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 41.375 |
| SRR9715740 | Leaf | 13.557 |
| SRR9715741 | Leaf | 28.595 |
| SRR9715739 | Root | 31.722 |
| SRR9715742 | Root | 74.521 |
| SRR9715743 | Root | 65.951 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 128.297 |
| SRR8749028 | MeJA induced 9h | 109.823 |
| SRR8749029 | MeJA induced 9h | 298.726 |
| SRR8749030 | Uninduced | 193.647 |
| SRR8749031 | Uninduced | 64.675 |
| SRR8749032 | Uninduced | 95.324 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 27.327 |
| SRR8400027 | Control - Root | 34.084 |