Gene detail

Gene detail information of Glyur000074s00005569

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT5G52450.1	0	MATE efflux family protein
NR	XP_003532532.1	0	PREDICTED: MATE efflux family protein DTX1-like [Glycine max]
COG	YP_003264696.1	5.00E-41	MATE efflux family protein [Haliangium ochraceum DSM 14365]
Swissprot	tr\|Q9SIA5\|DTX1_ARATH	3.00E-136	MATE efflux family protein DTX1
trEMBL	tr\|I1KQG4\|I1KQG4_SOYBN	0	MATE efflux family protein {ECO:0000256\|RuleBase:RU004914}

Sequence

Transcript Sequence

>Glyur000074s00005569.1
CTTTCTCCATTCTCTCTCTCGACCTCGCCATGGCTGCCGTCGCCATTGGACAATNGTCATCNCCTTCTCTGATGCCGCCGCCGTCACAACCTCCTGCCGCCTCCGCTGAAAATTCTCCCTGGCATCGCTCAGTGCTCGGCACAAACCAGAACAAAAAACCCAGCCATAATTAATTAGAAAAAACAAACCAGAGATTTGAAGGAAGAATTACCATAAAACAATGGCCGAAAACAATATCAACACCGAAAAAAGAAGAAGATCCTGGGCAATAACTAACAGATGCAACCCAAATGAGAAGAAAAAAAAATCGAAATCAAAGAAATGGAGCAGAATGTCATCGTTCTACATTCAAAATCTCACCTTTCATTTCCTCACCATCAACAAAACAACAATCTCTAACCCACCAATCTAAATCTGAAATTCCCCATTCCAATAATTCCAAAATTTATTTAAAAAAAATAATAATAATAACACCCACCAATAACCTTAATCTCTTCTTCAAAGTTCAAATCCAATCCAAATTCTCCATCACATTCTACAACCATTCGAAGCCCCACAATTCGTTTCTATAGTTGCATTCGATGCCGAGCATTGAGAAGCAAAACCCACGATTCATTTCCAGCACTGAGTGGGTGGGGGGCTTAAAAATGGAACCTTGATCTGGAAGGGGGGAAGAGGGGCACCTAATGTTGGTGTGGAGGTGGAAGTGGGTCCCACTGAGACTCTATGGANCAAGCGCGGGGGCCAGGCGCGGCTGTTCTGGTAGCACAGGAACACGTGGNGGTCGTAGTCGTCGACGGTGCCGGCGAGGTTGTCCTGGTACATCTCCGAACGGGAGANGCCATGCTTGGCGTCGTCGACGGCGGCGGAGGAAGCCATGGTGGGTTGTAATCTTGCAGAGGGTGGGTTGCCGGCCACGAGCACATTGCGGTTTCAGCTAGAATGGGGAGGGATGGGCCCACGAGAGTGGGTGGGGGATGGATTACCGGTTATTAAATATCCAAAAGCGCGACAACATGACAAAAGTGTATAAATAATATCCTATCCGGCGCATGCATCTCTATTGTCTCGTGTCTGGTTTCTTTGCCTGTCTCTTGTCTTTTCCAACTAAACAATATGGATAGAGGAGAAGACCAGAAGGCGTCTCTGCAGTTTCCCTTATTGGTACATAGTAGTATCACAGTAGTGGAAGAAGAAGATGGACTCAAATCCCATAACCATAATAATAATAATAATAATAATAATATACAGAGAAACAACAGGAGGGACAAGGCATTGGCAATAGAAAGAGCAGAAGTGTATGAAGAAGTGAGGAAGCAGTTATGGCTGGCAGGGCCCTTAGTCTCTGTCTCCTTTCTAAATTATTGCCTTCAAGTCATATCTGTGATGTTTGTGGGCCATCTCGGCGAATTGCCTCTCTCTGCTGCTTCCATGGCTACTTCTTTTGCCTCTGTCACTGGTTTTAGCTTACTCGTGGGAATGGCTAGTGCAATGGATACCTTGTGTGGCCAGTCATATGGAGCAAAGCAGCATCGTATGTTAGGCATACATATGCAGAGAGCCATGCTCATTCTTATGATTGTTAGCATACCCCTTGCAATTATGTGGACAAACACAACATCCATTCTAATTGCCCTTGGCCAAGATCCTGAGATATCTGTACAGGCTGGACAATATGCTCAGCTAATGATTCCAAGCCTTTTTGCCTATGGCCTTCTTCAGTGCCTCAACAGATTCTTGCAAACCCAAAACATTGTATTCCCAATGGTGTTCAGCTCTGGAGTTACTACTTTACTGCATGTCCTTATATGTTGGATTATGGTATTCAAATCTGGACTAGGGAATAGAGGAGCTGCCATAGCAAATGCTATATCTTACTGGATAAATGTCTTGATCCTGACCCTCTATGTCAAGTTTTCTCCTTCATGTTCAAAAAGTTGGACTGGATTTTCAAAAGAGGCATTGCATGGCATCCCCTCTTTTCTTAGACTTGCAATTCCTTCAGCTGTTATGGTTTGCATGGAAATGTGGTCATTTGAATTGATGGTTCTCCTTTCTGGCCTTCTTCCAAACCCAAAGTTGGAAACATCAGTGCTTTCTATCTGTCTGAATACTTCAACAACTGTTTGGATGATCCCCTTTGGACTCAGTGGAGCTGTAAGCACTCGGGTCTCAAATGAACTAGGAGCTGGTCATCCANGGGCTGCGCGTTTAGCCGTGTGTTTTGTGTTTGTAATGGCCATTATTGAGGGCATCTTTGTTGGAGCAGTGATGATACTAATACGCAATATTTGGGGCTATGCGTATAGTAATGAAGTAGAAGTGGTCAATTATGTGGCAAGCATGTTGCCAATTCTTGCAACATCCATTTTCCTGGATGCTCTACAGTGTGTTCTTTCAGGCGCGGCTAGAGGATGTGGTCGGCAAAAAATAGGTGCTTTCATTAATCTAGGATCATACTATTTAGTTGGGATTCCATCAGCTATCTTATTTGCTTTTGTCTTGCACATTGGTGGGAAGGGGCTTTGGCTGGGGATTATATGTGCACTTGTTGTTCAAGTGTCATGTCTTCTGATCATTACAATACGTACTGATTGGGAGCAAGAGGCAAAGAAGGCTAGAGAAAGTGTCTATGATTCAANGAGAGCAGGAGGCATAGTCTCATGAATTATATGGTATTTTCACATACTATATATTTTAACTGCTGGCACGGGGAACATTCCTCAATCCGAAGAGAGCTTCAGTTAAAGCCAACATGGCAAGAGAATCTTGATAAGTTTAAAGAGAAGAGAACCATGAATTCAATCAGAAACCAAGGCTCCCAAATGAAGCATCTCTTAATCTCTCTCCCTCTATGTAATACACACGTACACATATATTATATTAGACTTTGAAGCATCTCTTAATCTCTCTCCCTCTATGTAATACACACGTACACATATATTATATTAGACTTTGAAGCATCTCTTAATCTCTCTCCCTCTATGTAATACATACCATGCTTTCTGTTGAGTATAACTTGGGCGTTCAGCAAATGTTCTGGATTTAAGGATTTTTGTCTCCTCTGATCCTTATTCCTTTCTTTGCTGACAGAATT

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00074	298533	302961	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process

GO:0006855 drug transmembrane transport

GO:0055085 transmembrane transport

cellular_component
GO:0016020 membrane

molecular_function

GO:0015238 drug transmembrane transporter activity

GO:0015297 antiporter activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000074s00005569.1	PF01554.13	MatE	74	234	2.70E-30
Glyur000074s00005569.1	PF01554.13	MatE	295	457	1.40E-32

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	1.045
SRR1783600	control	1.020
SRR1783602	moderate drought stress	1.320
SRR1811619	moderate drought stress	1.306

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	0.806
DRR006520	Root Summer glycyrrhizin high producing strain	0.766
DRR006521	Root Winter glycyrrhizin high producing strain	0.646
DRR006522	Root Winter glycyrrhizin high producing strain	0.632
DRR006523	Root Summer glycyrrhizin low producing strain	0.604
DRR006524	Root Summer glycyrrhizin low producing strain	0.522
DRR006525	Leaf Summer glycyrrhizin high producing strain	10.048
DRR006526	Leaf Summer glycyrrhizin high producing strain	10.241

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	1.124
SRR2868004	Drought Stress (root)	0.553
SRR2967015	Control (root)	0.721

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	1.436
SRR9715740	Leaf	4.647
SRR9715741	Leaf	2.033
SRR9715739	Root	0.477
SRR9715742	Root	0.159
SRR9715743	Root	0.237

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.368
SRR8749028	MeJA induced 9h	0.161
SRR8749029	MeJA induced 9h	0.262
SRR8749030	Uninduced	0.174
SRR8749031	Uninduced	0.243
SRR8749032	Uninduced	0.158

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	0.916
SRR8400027	Control - Root	0.987