Gene detail

Gene detail information of Glyur000074s00005564

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT3G18165.1	7.00E-83	modifier of snc1,4
NR	KHN21656.1	1.50E-161	Pre-mRNA-splicing factor SPF27 like [Glycine soja]
Swissprot	tr\|Q949S9\|SPF27_ARATH	8.00E-108	Pre-mRNA-splicing factor SPF27 homolog
trEMBL	tr\|V7CT05\|V7CT05_PHAVU	2.00E-159	Uncharacterized protein {ECO:0000313\|EMBL:ESW32498.1}

Sequence

Transcript Sequence

>Glyur000074s00005564.1
ATGGACGCAATTTTTGACAAAAAGGCCCAAGGCACACACTTTCTTCTTCTTCTTGTTGTTTGCCGGGCTGTAGTTCAGCTCCTCACAGTCTACCGCAGCGCAGAGGAAAACCTTGGTCTCTCTCTCTATCTCTATCGGCAGCAGCCAATCCACCAACGAAGCATGGGAGATCGAAGCAACGGGGAAGTTCTGATGCTGGAGGCTCCACCGTCTTATGGTGGGTCAAGCAGTTCGAACGCCGAAATCATCGACGCATTGCCCTACATTGACGACGACTACGGTGACCCCAGGGTGAAGCTCGAGGTTGACCGTCTCGTCGAGGATGAGATGCGCCGAAGCTCTAAGAAGCCCACTGATTTCCTCAAAGATTTTCCCCCTCTCCCCAACTCCAATTTCCAGGCATCTCTCTCTCCCCCTACCCCGACGCTAGGTCTGATTGTGCTCTCTGGATTCCAGGGCTACCCTATGATTGCTAGAGANTACGAGCGTGTGAGAGCTGGAAGGCCTCCCGTTCCTCTTGACAGGTCGCGGTATGAATTGGAAATACCACCGGTGAATAAAAGGACCGATGAAACTGCTTGGAAGCAAGCTCTTCAGAGAGCTCAGCGCCTACTACAATATCAGACCATGAGGATGGAAAATTTGGATTTGTTGTTGAAATATGGTCCCGATGCCTGGAAACAGCACAACCAACGATTGGAAGTATACTTGTCGAGAATGCAGAAATTAGCCCAGGAACAAAATGAAAAGATTGAAAAAGTAAATCGTGAAAGGAAATATCATCAGCAAAATACTGCATACGAGCTTAATGCTTTGTCCATGCAATGGAAGGATCTCTGTCAGAAAAATATCGACATCAGAGCTGCGTGTGCTTCAGTTGAAACACGCATAAATGAACTGAAAAGAGAAGCAGCAGAAAGAGGCTGGAACTTGGACGCTATCACTGAAAATGGCCAATTGGCGAATTCCGAATTATGAGATTCGAATGTCCTCATCTAGTTTTGTATCCGTAATTCTGACTTTAATTGCTGTTGTACCTATTAATATTTAGTTTAATATCATTAAAAAATTACTCATTTGTTCACCCAAAAAAAGAAATCACGGAAAAAACTGGAGTAAACTGGTTGAAAGAAAAAATTTACCAATTTCGCATCTAATTAAATTAAAGTGTCGATTCCACTTCAATCTAT

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00074	272129	274583	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0006397 mRNA processing

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000074s00005564.1	PF05700.6	BCAS2	79	135	1.60E-13
Glyur000074s00005564.1	PF05700.6	BCAS2	146	309	3.20E-52

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	33.571
SRR1783600	control	33.767
SRR1783602	moderate drought stress	27.457
SRR1811619	moderate drought stress	27.217

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	39.982
DRR006520	Root Summer glycyrrhizin high producing strain	39.390
DRR006521	Root Winter glycyrrhizin high producing strain	40.116
DRR006522	Root Winter glycyrrhizin high producing strain	39.532
DRR006523	Root Summer glycyrrhizin low producing strain	53.313
DRR006524	Root Summer glycyrrhizin low producing strain	50.816
DRR006525	Leaf Summer glycyrrhizin high producing strain	23.354
DRR006526	Leaf Summer glycyrrhizin high producing strain	23.088

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	37.765
SRR2868004	Drought Stress (root)	28.524
SRR2967015	Control (root)	30.301

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	25.865
SRR9715740	Leaf	29.103
SRR9715741	Leaf	30.456
SRR9715739	Root	5.892
SRR9715742	Root	18.925
SRR9715743	Root	16.794

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	130.667
SRR8749028	MeJA induced 9h	92.326
SRR8749029	MeJA induced 9h	139.497
SRR8749030	Uninduced	59.455
SRR8749031	Uninduced	60.740
SRR8749032	Uninduced	60.631

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	41.107
SRR8400027	Control - Root	40.404