Gene detail

Gene detail information of Glyur000074s00005548

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT3G18035.1	4.00E-14	winged-helix DNA-binding transcription factor family protein
NR	XP_004503292.1	2.33E-115	PREDICTED: histone H1-like [Cicer arietinum]
Swissprot	tr\|Q00423\|HMGYA_SOYBN	3.00E-12	HMG-Y-related protein A
trEMBL	tr\|Q1SN01\|Q1SN01_MEDTR	5.00E-104	Linker histone H1 and h5 family protein {ECO:0000313\|EMBL:AET05563.1}

Sequence

Transcript Sequence

>Glyur000074s00005548.1
TTTTGTGATTCCTTGCCTTCCCTCTTTGAATTTCTTGTATTCCCATTTCCCCCCCACAGAATACCCATAATACCATTAGACTCCCTCCCCTCCACTTGTTTCAGTTTCACAAAAGCGGAAAGCTGAAAAGCGTTTAACCCTCTCTCTCTCTCTCTCTCTCTGTCTCACACAAGACAGAATCACGCACTTTACTCCCACAGTAATATCTATCACTCTCTCTCTCTCTCTCTGTCTTCCGTTAATGTGAGTAATTCCCAATTTTCGAATCGACCCTTCCCCTGTCTCTGTCTCTCCGTCGATGGACTCAACTTCGATCTCTCTTCCTCCTCCGCCNCCCACCACCGTCCCCTTCACCCTCGAAGAAGAAGCCGACGACAACAATCACACCACCGCCACTGCCACTGCCACTGCCACCGCCACCCACCCGCCCTATGCTGAGATGATATACAGAGCAATAGAGGCGCTGAAGGAGAAGGACGGGTCAAGCAAGAGAGCCATAGGGAAGTACATAGAGCAGGCCTACAGGGGCCTCCTCCCACCGGAACCGGCCCACTCCACCCTCTTGGCCCAACACCTGAAGCACTTGAAGTCCACCGGTCTCCTCGTCATGGTCAAGAAGTCTTACAAGCTACCTTCCACCCTCCCTCCCCCTCCTTCTCTTCCTGCTGCAGGATCTGATGNTCCCACTCCCCACAGGGGTCGCGGTCGCCCCCCTAAGCCCAAGCCCAATCCCATCCAAAATGCCCAGCCCGTCTTCGTTTCCCTCGGCCTTTCCGACGACCCCCCTCCACCAGCACCTNCCGTGGGCCCCGCGGTCCCACCTTCCAGAAGAGGGCGCGGGCGCCCACCCGGGACCGCCAGATCTAGGTTGCCGAAGAGGCCCGGCCGTCCTCCCAAGCCCAAATCCGTGTCCAGTGGCCTCAAGCGACGCCCGGGTCGACCCCCCAAAATNCAATCGCAGCCCACCGTCATCCCCTTCGCCGCTCCTGCTCCTCCTGGTGTTGTTTCCCCTAGGCCCAGGGGCCGGCCCAGGAAGAATGCGGGTGTGGGAGCAGCTCCTCCTGCACCACCTGCCCCGGGGTCGAGGCCCGGTCGTCCTCCTAAGCTTGCCGTTGTGGGTAGGCCCAAGAATCCCTCCGGAAGGCCCGTTGGCCGCCCAAAGCAATCAAAGGTGAAGGAATCTCTTGATGTGCTTAAGCCATATTTTGACCATGAAAGTCCAGTGACTGCAATTGCAGCAATCCAAGAGTTGGAAATACTATCAGCTTTGGACCTTAAAGCACCATTAAGGGATGTGACACAGCAACTGCAGCAATTTCCGGAACAGACACAGCCACAGCAACAGCCACTGCCACCACAGGCACAGCTGTATGAAGAGCAATATCTCCAGATACCCCCACAGCCACAGGTGCAGCAACCTTTTCAACCACATTCATCAGCCCCAAGCTAGGAAGACTTGCAATTTGATGGAGAACCACATGTACAAGTGTTTGTAAGTTTTAACAAGGCGCAGGAGGTAAGATCTGTAAAGTGTGTAGGAAGTAGGAGCAGTGGAGCACTGATTTTTCTGANAGTAGTATAATGACTGTTGTTTCCATTTGAGTTTGTTTGTTTGTTTTATGCTCCTTTAGATTGACCCCTGGAATAATATTTAGAGTACTGATGATGATCCTGTTGTTATTCAAGT

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00074	201943	204669	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0006334 nucleosome assembly

cellular_component

GO:0000786 nucleosome

GO:0005634 nucleus

molecular_function
GO:0003677 DNA binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000074s00005548.1	PF00538.14	Linker_histone	41	112	2.20E-17

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	90.302
SRR1783600	control	90.146
SRR1783602	moderate drought stress	84.849
SRR1811619	moderate drought stress	83.142

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	49.234
DRR006520	Root Summer glycyrrhizin high producing strain	49.513
DRR006521	Root Winter glycyrrhizin high producing strain	26.362
DRR006522	Root Winter glycyrrhizin high producing strain	26.091
DRR006523	Root Summer glycyrrhizin low producing strain	59.371
DRR006524	Root Summer glycyrrhizin low producing strain	59.487
DRR006525	Leaf Summer glycyrrhizin high producing strain	16.418
DRR006526	Leaf Summer glycyrrhizin high producing strain	16.606

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	50.994
SRR2868004	Drought Stress (root)	46.283
SRR2967015	Control (root)	54.197

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	23.919
SRR9715740	Leaf	13.775
SRR9715741	Leaf	23.971
SRR9715739	Root	46.123
SRR9715742	Root	57.500
SRR9715743	Root	51.279

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	78.588
SRR8749028	MeJA induced 9h	39.376
SRR8749029	MeJA induced 9h	106.965
SRR8749030	Uninduced	24.903
SRR8749031	Uninduced	27.541
SRR8749032	Uninduced	30.964

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	57.421
SRR8400027	Control - Root	55.151