Gene detail

Gene detail information of Glyur000074s00005545.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT1G18160.1	0	Protein kinase superfamily protein
NR	XP_003525192.1	0	PREDICTED: serine/threonine-protein kinase EDR1-like isoformX2 [Glycine max]
COG	YP_001958461.1	2.00E-30	hypothetical protein Aasi_1443 [Candidatus Amoebophilus asiaticus 5a2]
Swissprot	tr\|Q9FPR3\|EDR1_ARATH	3.00E-115	Serine/threonine-protein kinase EDR1
trEMBL	tr\|I1K5D0\|I1K5D0_SOYBN	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA05G33910.1}

Sequence

Transcript Sequence

>Glyur000074s00005545.1
GTGAAATGTAATCCTTCTGTCTCAATCTGACCCTCTCTCTGCTTAGTGGNTCATGTTTTTTGTGGCCCCTACNCACTCCCACTTGCTGCTACTCTCTGCTGTCTTAGCCTCTGCTTAGCTGCCNTTTAATGTTCTGTTCAAAACTCTCTTGTTCTTGTCTCTCCCATTTTTGTGCTCTGCTTCCTCCCCATGCACAGAAAGAAAGATCCATTCTTTTTCTCCATATATAGGTGCCCACTGATTTTTGGTTTTCCTGCTTCCTAAAGGTGATTGATTTATGGTCCAAAAACTTGTATCTGTGTGTTTTCTACATGTTCCAGTGTTGTCTGGTGAATAGGAGACTGCTCTCCATTTCAATTCAACAAGCATCAGGATCGCCCTGATTGGGGAACCTGTAAAGGTTGTTTGTTGCTGCNTGGAATTTGGATTTCATTGTTTTGGTTTTTTTTGGTTTAGGAGCTGTTTGCCAAAAAGGAAAGGGGGGTTCTTTGAATAATTCACAGCCACCACCCCAATACCTTTCTTCTGAGACTGAGGTTCATGCTTGGTCTAAGAACAACAACACAATGGAGAGGTGCTTTTCACTTCTTTAGCATTCAGTACTCTAGCTCGGTGACAAAAAGATATGAAGAACATTCTTAAGAAGCTTCATATCATGTCTAATCAATCAGAAGATGCACAAGGGTCTACTCCAGCAAGGAGCAACAAGTCCAGTGATGGTTCATCTTCATCACCTACCCGTAAGAAGCTTTCGAGTTGGTTGCATTCAGTTTCTAACAGGCAGAGTCCTCCCAGTCCTCCATCTCCGGGCCTGGCAAGAGGAGTGGAGCCATCTGATTCAGTGAGCTTTGGTGGTGGTTTGGATATTATTGTTTCCGATTTGACGAGGCGCGATTCGGGGTCTAGCACTTCAAAGGATCCTGAAGTGGAAGAAGAATATCAGATTCAACTGGCTTTGGAGATGAGTGCAAAGGAGGATCCTGAGGCTGTGCAGATTGAGGCTGTTAAGCAGATCAGTTTGGGATCCTGTGACCCTGAGAATACACCAGCTGAAGTTGTGGCATACCGATATTGGAATTACAATGCTCTTGGTTATGATGACAAGATCTCGGATGGTTTCTATGATCTGTATGGGATCTTAATTGAGGCAAACTCTGCAAGAATGCCTTCACTTGTAGATCTGCAAGGAACACCAATCTCAGGTGGTGTCACATGGGAAGCAGTCTTGGTCAACAGGGTTGCTGATTCCAATTTGTGGAAACTTGAGCAAAAGGCCCTGAAGCTGGCAGTCGAGTCAAAAAAAGATTTTGAAGTAGTTTTAGACAGAGAATTGGTGCACAAGCTTGCAGTAATAGTGGCTGACTATATGGGAGGACCAGTTGGAGATCCTGAAAGCATGTCAAAAGCATGGAGGAGTCTTAGTTACAGTCTAAAAGCAACCCTTGGTAGCATGGTTTTACCACTNGGTTCACTGACCATTGGATTGGCTCGGCATCGTGCATTGTTATTTAAGGTTTTAGCGGATAGTTTNGGCATCCCATGTCGGCTGGTGAAAGGACTCCAATATACAGGTTCCGATGATGTGGCAATGAACTTTGTCAAGATTGATGATGGAAGGGAGTACATTGTTGACCTCATGGCAGCTCCTGGAACACTTATTCCAGCTGATGCAACTGGATCACATGTAGAGTATGATGAATCTCCTTTTGTAGCCAGTCCTTCATCAAGAGACCCTGATTCATCTCATATAGCATCATTCAGCAGTGGGGTTGGAAGTTCATCCGAAGTAACTTCAGACTTTGGGACACTTGATAAAGGAAACAGGTCTAAACATTTGACCTATGCAGGGAAAGAATCTGATGTAAGCAGGCCCCCTACTGGCAAGGAAGAATTAAAGAAACCATTAAATGAATTCAAAAGTATTCCTAATGTAGAGAAGATCACGGCGAGGGAATCTCTTTGCAGACCTAATAATTATCCATATATGCATGGGAGATCTCCTTCTTGGACTGAAGGGATCAGTTCCCCTGCAGCACGNAGAATGAAAGTCAAAGATGTTTCCCAATATATGATTGATGCTGCAAAGGAGAACCCTAACTTGGCTCAAAAGCTTCACGATGTTTTNCTTGAAAGTGGTGTTGTTGCTCCTCCAAACTTGTTTTCTGAAATATATCATGAGCAGTTAGGTTCCCCAACTGAGGCCAATTTTCCAACTGAAGAAAAAGATGAATACAAACAGGGAAGTGCACAGCAAGAAGCTAAGGTTGATGATAATCTAGGTCCTGCTCGATTTTTGCCTCCATTGCCCCACCANAGAGTTCATCCCAGAGCAAGTCCTAGCAGTCAGATGGAGCATTCTAAACCTGTAGAAGGCTTAGGAATTGGCCTTCCTCTTGATACAAGGGAAGCTGCTGGACAGCACATGCCATCTCAGGCAGAAGCGACACAGGTAAAGTATGGGAAAAATGTCCCGGTTGCTGCTGCTGCAGCTGCAGCAGCTGCTGTTGTGGCATCTTCTATGGTAGTTGCTGTGGCAAAGTCAAATGCTGACTCAAATCTTGAGATTCCTGTAGCAGCAGCTGCTACTGCTACTGCGGCAGCAGTTGTAGCAACCACTGCTGCTGTCAATAAACAGTATGAGCAGGGCAGTCGAAGTGATGGAGATACAGAGGGTGCTGGTTCTGAGCCAAAAGGCAGTGGTGATAGAGAGCATAATGCTTTAGGAGCAAACTCAGAAGGCGAGAGAAAATCTGATAGATCAGTAGGTAATGATAGCACAAAATCTGATTCTGCGCTAGATGATGTTGCCGAGTATGACATTCCATGGGAGGAAATCACGATGGGTGAGCGTATCGGACTTGGATCATATGGAGAAGTGTATCGTGGTGATTGGCATGGAACTGAAGTTGCTGTAAAGAAGTTTCTAGATCAAGATATCTCTGGTGAATCACTTGAAGAATTCAAAAGTGAGGTCCAAATAATGAAAAGAGTGAGGCATCCAAATGTTGTTCTCTTCATGGGAGCTGTTACTCGACCTCCAAATCTTTCAATTGTTACTGAATTTCTTCCTAGAGGGAGTTTGTATAGATTAATTCACCGACCTAACAATCAATTAGATGGGCGAAAGCGTTTGAGGATGGCCCTGGATGCTGTATGTGATTTTGGCTTATCTCGAATGAAGCATAGTACGTTCCTTTCTTCCAGATCAACTGCGGGAACAGCTGAGTGGATGGCTCCAGAAGTTTTGAGAAATGAACTTTCAGATGAAAAGTGTGACGTTTATAGCTATGGGGTTATATTNTGGGAGCTCTGTACTATGCGGCAACCCTGGGGAGGAATGAATCCAATGCAAGTTGTTGGTGCTGTGGGTTTCCAACATCGCCGTCTTGACATTCCTGATGATGTAGACCCTGCCGTTGCAAATATTATCAGACAGTGTTGGCAGACAGATCCAAAGTTGAGACCAACATTTGCTGAGATCATGGCCGCTCTGAAGCCATTGCAGAAGCCAATTACTAGTTCTCAAGTGCATAGACCAAGTACTCAGTCATCACGAGTTGNTGAAGACGCCGCAGGATAGGAGACAATTATACAGCTAACGAATCTTTTTTTCATTTTGCTGCTAAAAAAGTGAGGGCAAGTTGTAGAGTATTTGACATTTGGTATATATATTAAAAAAAAAAAAAGCGATTGGTTCAAGACCCATCAGCTAACATACATTCTTATTCAAGGTTTTCACTCCTGTGTATTTCCTTTTCTTTTTCTCTGTTTGTTTTGTTTGTTNCCCTTCTCTTCTGTAATCTACAATGCAGAATGCAGCACCATTGTTAGGTTGTACCATTTTGTTTGTACAAAATTCTTTGGCAAATGTTGTAATCAGCATCTAAATTTTGATGTCCGTAAATAGTTATGAAAAGTTNCAGCTGTAACTTGAACAGAAGAAAGGAT

Protein Sequence

>Glyur000074s00005545.1
MKNILKKLHIMSNQSEDAQGSTPARSNKSSDGSSSSPTRKKLSSWLHSVSNRQSPPSPPSPGLARGVEPSDSVSFGGGLDIIVSDLTRRDSGSSTSKDPEVEEEYQIQLALEMSAKEDPEAVQIEAVKQISLGSCDPENTPAEVVAYRYWNYNALGYDDKISDGFYDLYGILIEANSARMPSLVDLQGTPISGGVTWEAVLVNRVADSNLWKLEQKALKLAVESKKDFEVVLDRELVHKLAVIVADYMGGPVGDPESMSKAWRSLSYSLKATLGSMVLPLGSLTIGLARHRALLFKVLADSXGIPCRLVKGLQYTGSDDVAMNFVKIDDGREYIVDLMAAPGTLIPADATGSHVEYDESPFVASPSSRDPDSSHIASFSSGVGSSSEVTSDFGTLDKGNRSKHLTYAGKESDVSRPPTGKEELKKPLNEFKSIPNVEKITARESLCRPNNYPYMHGRSPSWTEGISSPAARRMKVKDVSQYMIDAAKENPNLAQKLHDVXLESGVVAPPNLFSEIYHEQLGSPTEANFPTEEKDEYKQGSAQQEAKVDDNLGPARFLPPLPHXRVHPRASPSSQMEHSKPVEGLGIGLPLDTREAAGQHMPSQAEATQVKYGKNVPVAAAAAAAAAVVASSMVVAVAKSNADSNLEIPVAAAATATAAAVVATTAAVNKQYEQGSRSDGDTEGAGSEPKGSGDREHNALGANSEGERKSDRSVGNDSTKSDSALDDVAEYDIPWEEITMGERIGLGSYGEVYRGDWHGTEVAVKKFLDQDISGESLEEFKSEVQIMKRVRHPNVVLFMGAVTRPPNLSIVTEFLPRGSLYRLIHRPNNQLDGRKRLRMALDAVCDFGLSRMKHSTFLSSRSTAGTAEWMAPEVLRNELSDEKCDVYSYGVIXWELCTMRQPWGGMNPMQVVGAVGFQHRRLDIPDDVDPAVANIIRQCWQTDPKLRPTFAEIMAALKPLQKPITSSQVHRPSTQSSRVXEDAAG

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00074	177201	185615	-

Gene family

Gene family	subfamily
Protein Kinases Family	PPC:2.1.3

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0006468 protein phosphorylation

molecular_function

GO:0004672 protein kinase activity

GO:0005524 ATP binding

GO:0016772 transferase activity, transferring phosphorus-containing groups

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000074s00005545.1	PF14381.1	EDR1	140	346	1.30E-71
Glyur000074s00005545.1	PF07714.12	Pkinase_Tyr	737	841	2.00E-19
Glyur000074s00005545.1	PF07714.12	Pkinase_Tyr	843	955	6.50E-27

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	10.237
SRR1783600	control	10.316
SRR1783602	moderate drought stress	11.200
SRR1811619	moderate drought stress	11.153

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	8.157
DRR006520	Root Summer glycyrrhizin high producing strain	7.914
DRR006521	Root Winter glycyrrhizin high producing strain	2.003
DRR006522	Root Winter glycyrrhizin high producing strain	1.987
DRR006523	Root Summer glycyrrhizin low producing strain	8.159
DRR006524	Root Summer glycyrrhizin low producing strain	7.753
DRR006525	Leaf Summer glycyrrhizin high producing strain	5.991
DRR006526	Leaf Summer glycyrrhizin high producing strain	5.841

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	20.514
SRR2868004	Drought Stress (root)	27.313
SRR2967015	Control (root)	31.780

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	16.067
SRR9715740	Leaf	17.389
SRR9715741	Leaf	20.886
SRR9715739	Root	2.173
SRR9715742	Root	10.606
SRR9715743	Root	9.244

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	5.079
SRR8749028	MeJA induced 9h	9.265
SRR8749029	MeJA induced 9h	4.952
SRR8749030	Uninduced	5.664
SRR8749031	Uninduced	4.916
SRR8749032	Uninduced	4.111

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	15.457
SRR8400027	Control - Root	18.341