Gene detail

Gene detail information of Glyur000074s00005543

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT1G18170.1	5.00E-74	FKBP-like peptidyl-prolyl cis-trans isomerase family protein
NR	XP_004503291.1	1.17E-141	PREDICTED: peptidyl-prolyl cis-trans isomerase FKBP17-2, chloroplastic-like [Cicer arietinum]
COG	YP_001939054.1	8.00E-15	FKBP-type peptidyl-prolyl cis-trans isomerase [Methylacidiphilum infernorum V4]
Swissprot	tr\|Q9LDY5\|FK172_ARATH	5.00E-99	Peptidyl-prolyl cis-trans isomerase FKBP17-2, chloroplastic (Precursor)
trEMBL	tr\|B7FKE1\|B7FKE1_MEDTR	3.00E-138	Peptidyl-prolyl cis-trans isomerase {ECO:0000256\|RuleBase:RU004231}

Sequence

Transcript Sequence

>Glyur000074s00005543.1
CAAAAGGCTAGTTAAGAGGGAACCAGTCGTTGACCAAAAAAAAAGAGGGAACCAGTCACTATGAGGATGCCCTCACAATAAGGATAAGGTGGGGACTAGTAGAGTAGCCCCTAACTGCAGCTATGTGTAAAGATATTTCTTTTTGCCCTTGTTGTATCTAAACCAAACTCGTTAACATTATTATTATTATTATTATTATCCTGCACATGGCTACTTTCTTTGGTTCGCCTCCACCATTTTTGTCCCTCCCCCATACGAGAACTAGCCATCAATATCATCTCATTCCTTCATCATCATCACCAACACCTCCCCCACAACCTCAGCCCCCAGGTTCTTCTCCACAGTCAACAACAAATCTGAATGAGGAGCCTGTGCAAGCCTCCAGCAGAGCACAGCAACAGAAGCCCATTAAACCTGTGACTTCCTCAACTAAGGTTGAATCCACAGATTGGGTAGCCACTTCCCTTACCAGACGGTTTGGGCTGGGAGCTGGTCTTGCATGGGTTGGCTTTCTTGCATTCGGTGTTATCTCAGAACAAATTAAGACTCGCCTTGAAGTTTCTCAGCAAGAGGCTAATACAAGGAACGTTGAGGAGGAGGTAGAGGTGACGCTGCCTAATGGCATAAGGTACTATGACTTGAAAGTTGGTGGTGGAGCTTCGCCAAGGCCNGGTGATTTGGTGGTGATTGACATTATGGGAAAAGTTGAGAGCAGTGGGGAAGTGTTTGTGAACACATTTGAGGGGGACAAGAAACCATTGGCTCTAGTGATGGGGTCAAGGCCATATAGTAAGGGAGTGTGTGAAGGGATAGAATATGTACTAAAAACTATGAAGGCAGGAGGGAAGAGGAAGGTAACTGTCCCTCCCAAATTGGGATTTGGAGAGAATGGTACTGATTTAGGCTCTGGTGTTCAAATCCCTCCACTTGCAACACTTGAATATATTGTAGAGGTTGATAAGGTCTCCATTGCACCCGTTTGAAGATTGATTAAATGTAAAAGCAAGTAAATTATGGCAAAATATATTTTTCCTCATCAAGTACTAGGCAATTCCTTGATCCAATAATGCAGGGTGCTTTGGATTTTTATCATATAAAATTATCCACTTCTTTTCTCATCCTTTTCTATGGGATTGAAAAGTAATATACATGTGAAACTATCGAGAACTTTCCCTTNCTGAACTTTCCCTTGCTGAATTTTCTCTGCTATCTTGATGTGTCCAAA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00074	173424	175140	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0006457 protein folding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000074s00005543.1	PF00254.23	FKBP_C	152	250	2.90E-18

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	1.487
SRR1783600	control	1.349
SRR1783602	moderate drought stress	2.884
SRR1811619	moderate drought stress	3.021

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	5.776
DRR006520	Root Summer glycyrrhizin high producing strain	5.689
DRR006521	Root Winter glycyrrhizin high producing strain	21.715
DRR006522	Root Winter glycyrrhizin high producing strain	20.941
DRR006523	Root Summer glycyrrhizin low producing strain	1.354
DRR006524	Root Summer glycyrrhizin low producing strain	1.354
DRR006525	Leaf Summer glycyrrhizin high producing strain	333.582
DRR006526	Leaf Summer glycyrrhizin high producing strain	332.294

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	1.443
SRR2868004	Drought Stress (root)	1.342
SRR2967015	Control (root)	1.610

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	132.107
SRR9715740	Leaf	188.074
SRR9715741	Leaf	98.034
SRR9715739	Root	0.578
SRR9715742	Root	1.357
SRR9715743	Root	1.047

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	4.884
SRR8749028	MeJA induced 9h	4.194
SRR8749029	MeJA induced 9h	7.491
SRR8749030	Uninduced	8.232
SRR8749031	Uninduced	2.401
SRR8749032	Uninduced	7.307

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	1.836
SRR8400027	Control - Root	2.452