Gene detail

Gene detail information of Glyur000074s00005542

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT1G18180.1	3.00E-114	Protein of unknown function (DUF1295)
NR	XP_006579399.1	0	PREDICTED: uncharacterized protein LOC100780288 isoform X2 [Glycine max]
COG	YP_006439583.1	2.00E-56	protein of unknown function DUF1295 [Turneriella parva DSM 21527]
trEMBL	tr\|I1K5D4\|I1K5D4_SOYBN	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA05G33940.1}

Sequence

Transcript Sequence

>Glyur000074s00005542.1
GGTGGGCGTAAGATTGGTCCAAGACATAAGTCCCCGCGCGCGCNCACATGCAAATGCAAGTGGTTTGTGTGTGTTTGCGCATTCAATGTTACCCAAGTAAGCGGCTAAACTTGCCTTCCTCCTTCGTATTCCCATTTGTTATCCATAAAACGATTGGTCGTATCTGTCGTCTACGCTCTCCTCACTCCTCCTCCTCCTCCTCCTCATCTTCTTCTTATTCAAATTCAGCTTAGAAAGCTTCTCACTCTGAAAACTGAAAACAACAAAATTAGATAACAGTAACTGCAAAGAGAAAGGAGAGGCAGGCATATGATATGGGCACTGTCATTGACTCCCATTTCTTAGGCCTCACCGCCATAGTCACTGTTGGCTATCAGTTTTTGTTTTTCGTCATCACTGCACTCCTCAAATTCGACAAGGTCACTGATTTTGCCGGAAGTACGAATTTCGTTATAATTGCTATATTGACCCTGTTGATCAAAGGCTCCTGGCATTTTCGACAGATAGTCCTGTCTCTGTTTGTTGTATTATGGGGTCTTCGCCTGGGGCTTTTCCTCTTATTCAGGATTTTACAGTGGGGAGAGGATCGACGCTTTGATGAAATGCGCAATAATTTGGGTAGATTGGCCATATTTTGGATATTTCAGGCTGTCTGGGTTTGGGCTGTGAGTTTACCTGTTACTGTGGTTAATGCAAGCGACAGAAATCCTTTACTACAGGTTGAGGATATAATAGGGTGGATTATGTGGTCTGTGGGTTTTATTATTGAAGGTTCAGCAGATCAACAAAAGCTGTGTTTCAAAAAGTCCCCAGAAAATNGAGGGAGGTGGTGTAATGCTGGGCTCTGGAAATATTCTCGTCATCCTAACTATTTTGGTGAGATATTGCTTTGGTGGGGAATTTTTGTGGCATCTACACCTGTACTGAGGAATGCTGAATGGCTGGTAATCATTGGACCAATCTTTCTCACATTGTTGCTTCTTTTCGTCAGTGGCATTCCAATGCTTGAGGATTCAGCAGATAAGAAGTTTGGCAATGTGGATGGATATAGGACATATAAACGAAGAACTAGCCCTTTAATCCCGTTGCCACCATCAGTTTACGGAAACTTACCTGCATGGTTCAAGACATCTTTTCTCTTTGAATTTCCATTCTACAGTCGTAATCTTCCACAAGAAGGACCAAGCTGATCAAGCAGTGGGAAAAGCAGTGATGCCTTGAAAATTGGCTAGCACTTGGTTATCTGAATTCGATCGATTTCTTTCTTACACCACACANAAGTTGTAGTTGCCATCATTGCCTNCCATGGTTAGGGATGTTCTTCGGGGTTCTTTCAAGGCCTTGTAATGTTGTTGCAGCTTTTCTTCTAGTTTTTATCTTTTTAATTTGGTTGTTCTCTTTTTGATACAATATGTTGTGTGCAAGTACTATGGTTTGTGCAGGTAACTAGTGGATCACCATTTCTGTTTGTCATCTCATTTCTTCCACTGCAATTATCGTTTTGGACCTGCAGCATGCCAGCATTGGCAGATATATTGAACACAAATG

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00074	167547	171763	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0006629 lipid metabolic process

cellular_component

GO:0005737 cytoplasm

GO:0016021 integral component of membrane

molecular_function
GO:0016627 oxidoreductase activity, acting on the CH-CH group of donors

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000074s00005542.1	PF06966.7	DUF1295	24	252	7.50E-86
Glyur000074s00005542.2	PF06966.7	DUF1295	24	232	1.50E-77
Glyur000074s00005542.3	PF06966.7	DUF1295	24	232	1.50E-77

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	8.694
SRR1783600	control	8.929
SRR1783602	moderate drought stress	5.504
SRR1811619	moderate drought stress	5.340

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	10.711
DRR006520	Root Summer glycyrrhizin high producing strain	11.180
DRR006521	Root Winter glycyrrhizin high producing strain	6.568
DRR006522	Root Winter glycyrrhizin high producing strain	6.317
DRR006523	Root Summer glycyrrhizin low producing strain	5.617
DRR006524	Root Summer glycyrrhizin low producing strain	5.437
DRR006525	Leaf Summer glycyrrhizin high producing strain	42.313
DRR006526	Leaf Summer glycyrrhizin high producing strain	42.404

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	13.296
SRR2868004	Drought Stress (root)	19.631
SRR2967015	Control (root)	17.946

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	112.297
SRR9715740	Leaf	91.504
SRR9715741	Leaf	118.532
SRR9715739	Root	11.073
SRR9715742	Root	12.710
SRR9715743	Root	11.260

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	18.348
SRR8749028	MeJA induced 9h	20.520
SRR8749029	MeJA induced 9h	14.676
SRR8749030	Uninduced	21.147
SRR8749031	Uninduced	23.350
SRR8749032	Uninduced	10.002

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	17.534
SRR8400027	Control - Root	19.076