Gene detail

Gene detail information of Glyur000074s00005539

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT1G18200.1	7.00E-72	RAB GTPase homolog A6B
NR	XP_004503285.1	8.65E-135	PREDICTED: ras-related protein RABA6a-like [Cicer arietinum]
COG	YP_008431664.1	2.00E-21	hypothetical protein N186_01315 [Thermofilum sp. 1910b]
Swissprot	tr\|Q0WQN4\|RAA6B_ARATH	4.00E-100	Ras-related protein RABA6b
trEMBL	tr\|I1KQK0\|I1KQK0_SOYBN	6.00E-135	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA08G05800.1}

Sequence

Transcript Sequence

>Glyur000074s00005539.1
CCTATTTTTACTTTCTTCCTTGCCTGTATAGTTAGTTCATAACCATTAATTAACCATCATTTTCTTTTTGTTTTAAGTTTCTTCATCTGCTCATTAGCCTTTGTTTCTTCTGAATTTCTTTTATTTGGGTATTAGGAAAAAGGTAGAGACTTGTAGAGAATTAAGGATCATATAATTATTAATGGCTGATGTAATATTTGATGAAGAGTGTGATTACCTGTTCAAGGCTGTTCTGATTGGGGACTCNGGGGTGGGGAAATCAAATCTGCTGTCAAGGTTTGCAAAAGATGAATTCCGGTTGGATTCCAAACCCACCATAGGAGTGGAATTTGCTTACCGGAACATCAAGGTCAGAGACAAACTCATCAAGGCCCAGATATGGGACACTGCCGGCCAAGAAAGGTTTAGAGCGATCACAAGTTCGTATTACAGAGGAGCCTTGGGGGCGTTGCTAGTGTATGACATAACGAGGCGATCAAGTTATGAGAATATAAGCAAATGGTTATTTGAGCTGAGAGAGTTTGGTGGAGAAGACATGGTGGTTATTCTGGTGGGAAACAAATGTGATCTGGGTCAATCAAGAGAGGTTGAGGAAGAAGAAGGTAAAGGGTTTGCAGAGGCAGAAGGGTTGTGTTTCATGGAAACCTCTGCTCTGAAGAATCTGAACGTTGAGGAAGTGTTCTTACAAATGATCACCAAGATACTTGAAATCACAACCCANAAGAGTTTGGATGCTAAGATGGATGAGAAACCGATTAGTCTCTCGAGTGGGAAGGAGATCCATATAGCTGATGCTGATGAAGTCACCGCGACTAAGCAACCTACTTGCTGTTCCAGATGAGACCTTTTGTGGGGGAAATTTTGAGATTTTGCAGGAATACACATCTCTGAGTCTTTAATTTGATTCATCCCATTTTTCCCCACTTTTTTCTTTACAATTTTTCTTCTTCATTCGCGTTTCTTTATTACAAGGTGACGATGATTTGATGCTAGCATGTAAATGCTGATTTTTATATCATACGTGGAATTTTTTTTTTNAAACTTT

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00074	150415	153967	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process

GO:0006886 intracellular protein transport

GO:0006913 nucleocytoplasmic transport

GO:0007165 signal transduction

GO:0007264 small GTPase mediated signal transduction

GO:0015031 protein transport

cellular_component

GO:0005622 intracellular

GO:0016020 membrane

molecular_function

GO:0003924 GTPase activity

GO:0005525 GTP binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000074s00005539.1	PF00071.17	Ras	15	175	2.90E-60

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	8.246
SRR1783600	control	8.252
SRR1783602	moderate drought stress	3.175
SRR1811619	moderate drought stress	3.137

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	66.737
DRR006520	Root Summer glycyrrhizin high producing strain	64.490
DRR006521	Root Winter glycyrrhizin high producing strain	19.739
DRR006522	Root Winter glycyrrhizin high producing strain	19.943
DRR006523	Root Summer glycyrrhizin low producing strain	76.978
DRR006524	Root Summer glycyrrhizin low producing strain	77.127
DRR006525	Leaf Summer glycyrrhizin high producing strain	3.857
DRR006526	Leaf Summer glycyrrhizin high producing strain	4.008

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	8.397
SRR2868004	Drought Stress (root)	9.621
SRR2967015	Control (root)	13.018

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	23.174
SRR9715740	Leaf	15.453
SRR9715741	Leaf	42.142
SRR9715739	Root	19.069
SRR9715742	Root	44.380
SRR9715743	Root	38.787

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	9.946
SRR8749028	MeJA induced 9h	11.896
SRR8749029	MeJA induced 9h	24.269
SRR8749030	Uninduced	12.689
SRR8749031	Uninduced	7.122
SRR8749032	Uninduced	10.186

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	24.119
SRR8400027	Control - Root	38.134