Gene detail information of Glyur000074s00005536 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT2G01390.1 | 1.00E-173 | Tetratricopeptide repeat (TPR)-like superfamily protein |
| NR | XP_004503279.1 | 0 | PREDICTED: pentatricopeptide repeat-containing protein At2g01390-like [Cicer arietinum] |
| Swissprot | tr|Q9ZU29|PP139_ARATH | 0 | Pentatricopeptide repeat-containing protein At2g01390 |
| trEMBL | tr|V7CT34|V7CT34_PHAVU | 0 | Uncharacterized protein {ECO:0000313|EMBL:ESW32528.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00074 | 109417 | 111826 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000074s00005536.1 | PF01535.15 | PPR | 144 | 174 | 0.0001 |
| Glyur000074s00005536.1 | PF13041.1 | PPR_2 | 177 | 221 | 1.60E-12 |
| Glyur000074s00005536.1 | PF01535.15 | PPR | 249 | 279 | 0.00024 |
| Glyur000074s00005536.1 | PF13041.1 | PPR_2 | 504 | 550 | 1.30E-10 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 3.971 |
| SRR1783600 | control | 4.100 |
| SRR1783602 | moderate drought stress | 3.690 |
| SRR1811619 | moderate drought stress | 3.775 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 2.808 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 2.552 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 1.568 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 1.612 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 3.280 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 3.209 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 1.451 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 1.299 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 3.918 |
| SRR2868004 | Drought Stress (root) | 2.862 |
| SRR2967015 | Control (root) | 2.604 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 1.337 |
| SRR9715740 | Leaf | 2.450 |
| SRR9715741 | Leaf | 0.634 |
| SRR9715739 | Root | 0.215 |
| SRR9715742 | Root | 2.253 |
| SRR9715743 | Root | 1.884 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 0.559 |
| SRR8749028 | MeJA induced 9h | 1.129 |
| SRR8749029 | MeJA induced 9h | 0.494 |
| SRR8749030 | Uninduced | 0.274 |
| SRR8749031 | Uninduced | 0.082 |
| SRR8749032 | Uninduced | 0.170 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 5.425 |
| SRR8400027 | Control - Root | 5.440 |