Gene detail

Gene detail information of Glyur000074s00005525

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT1G73590.1	0	Auxin efflux carrier family protein
NR	XP_007152685.1	0	hypothetical protein PHAVU_004G150600g [Phaseolus vulgaris]
COG	YP_001740252.1	4.00E-06	putative Auxin Efflux Carrier [Candidatus Cloacimonas acidaminovorans str. Evry]
Swissprot	tr\|Q5SMQ9\|PIN1_ORYSJ	0	Auxin efflux carrier component 1
trEMBL	tr\|V7C3I7\|V7C3I7_PHAVU	0	Uncharacterized protein {ECO:0000313\|EMBL:ESW24679.1}

Sequence

Transcript Sequence

>Glyur000074s00005525.1
AAAATATTTGCTGTATTCTCTGCTTATTACCACCCCACTCACTTCACTTCACTTTACCTCAAAAACCAAAACACATGCTCTCCCACATCCCCATCTCTTTTCGTCATCATCACCCCCACCCCTCCCACAACCGCCACTGTTCCTCTCTTTTTATTCTTCTCCTTCTTCAACTCCTCTCTTTCACCATCATCCCCACAAACTCCAACTCCGAAAGCACCATTCGGTGAGATATCTCTTCTGTGCTGTGGTGTCCAAGAAACTAACAACAGCAAGCGAAGAAGAAGAATCAAGAGATGATCACGTTAACAGACTTCTACCATGTGATGACCGCAATGGTGCCACTGTACGTGGCCATGATACTCGCCTACGGTTCGGTGAAGTGGTGGAAAATCTTCTCCCCTGACCAATGCTCCGGCATCAACCGCTTCGTTGCCCTGTTCGCNGTCCCTCTGCTTTCCTTCCACTTCATCGCCTCCAACAACCCTTACAAGATGAACCTACGCTTCATCGCCGCCGATACNCTTCAGAAGATCATCGTGCTGGTGGTCCTCTTCATCTGGAGTAACGTGAGCAAGAGGGGTTGTTTGGAATGGACAATAACCCTGTTCTCCATTTCCACCCTCCCAAACACGCTTGTGATGGGAATCCCCTTGCTGAAAGGGATGTACGGCGAGTTCTCTGGGAGTTTAATGGTCCAAATTGTGGTCCTCCAGTGCATCATTTGGTACACCCTGATGCTGTTCATGTTCGAGTACAGAGGAGCCAGAATGCTCATCTCTGAACAGTTCCCAGACACTGCCGGTACCATTGTCTCCATCCACGTGGACTCTGATGTCATGTCACTCGACGGAAGACAGCCCTTGGAGACCGATGCGGAGATCAAAGAGGATGGGAAGCTTCACGTCACAGTCAGAAANTCCAATGCTTCGAGATCAGACATCTTCTCGAGAAGGTCTCAGGGGCTTTCCTCCACCACCCCTCGCCCTTCAAACCTCACCAATGCAGAGATATACTCTCTACAGTCCTCTCGGAACCCCACTCCCAGAGGCTCCAGTTTCAACCACACTGATTTCTATTCCATGATGGCTGGGGGAAGAAACTCCAACTTTGGTGCCTCTGATGTTTATGGGCTCTCTGCTTCGAGAGGACCAACTCCGAGGCCTTCTAATTATGATGAAGATGCTTCGGCTGGTGGTGGGAATAAGCCGAGGTATGGCCATTACCATGGTGCTTCTGGTGGAACAGGGGGACATTACCCTGCACCCAACCCTGGGATGTTCTCTCCCACCACTGCCTCCAAAAATGCAAATGCCCCAAAGANGCCCAATGGTCAGGCACAGCAGAAACCAGAGGATGGGAACAAGGACCTTCATATGTTCGTTTGGAGTTCAAGTGCTTCCCCTGTTTCAGACGTGTTTGGTGCCCATGAATATGGACTTCATGATCACAAAGATGTCAAATTGACTGTCTCTCCAGGAAAAGTGGAGGGTCATAGGGATGCTCAGGAGGAGTACCTAGAGAAGGATGATTTCAGCTTCGGAAACAGGGGAATAGATGGAGAGATGAATCACCATGATGCTGACAAGGTTGGAAACGGGAAGCCGAAAACTATGCCCCCANCAAGTGTGATGACGAGGCTCATATTGATCATGGTGTGGAGGAAACTCATCAGAAACCCCAACACCTACTCCAGCCTAATCGGCCTAACTTGGTCACTCGTTTCATTCAGATGGAATATTGAAATGCCTGCCATCATAGCAAAGTCCATTTCCATANTGTCGGATGCAGGGCTTGGCATGGCCATGTTCAGTCTTGGGCTGTTCATGGCCTTGCAACCGAGGATCATAGCATGTGGAAATTCCACAGCAGCTTTTTCAATGGCCGTGAGATTCCTTACAGGTCCAGCTGTCATGGCAGCTGCTTCCATTGCTGTTGGACTCAGGGGCGTTCTCTTACACGTTGCCATTGTTCAGGCAGCTCTTCCACAAGGAATTGTACCGTTTGTCTTTGCGAAGGAATACAATGTACATCCTGATATTCTCAGTACAGGAGTAATTTTTGGGATGTTGATTGCATTGCCCATAACTCTCGTTTATTACATCTTGCTGGGACTATGAATGGATGAAAAGATGGTTGACACTCAAGATTACATGTGGCATTCATGCAAGCTCGCTCGTTTGAGGCTCCTTAGATCAGCACCACCAGAGACAAAAAAAAAATGTTCAATGAAATAGAAAAGCATCACTTATAATTGAATAGGAGGAATCAACCAATGAGTTTTTATTTTTTTTATTTTCTTTAATGAATGAATGTAAAATCATGCTTAGCTAATTTATAAAACGGCTGTCTCGTTAAATTTCAAACTAAGACGTCCTCGGATTCCATATCAGTCGTCAAGCTAAGCAGGAAAAGAAAGCAATGGAAACTTTGTTGAAATTGGAACCANTGTCATTTTTACCCAGT

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00074	69577	73503	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0055085 transmembrane transport

cellular_component
GO:0016021 integral component of membrane

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000074s00005525.1	PF03547.13	Mem_trans	9	602	4.60E-190
Glyur000074s00005525.2	PF03547.13	Mem_trans	9	477	2.20E-123

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	15.486
SRR1783600	control	15.461
SRR1783602	moderate drought stress	14.647
SRR1811619	moderate drought stress	14.502

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	19.564
DRR006520	Root Summer glycyrrhizin high producing strain	19.551
DRR006521	Root Winter glycyrrhizin high producing strain	1.086
DRR006522	Root Winter glycyrrhizin high producing strain	1.014
DRR006523	Root Summer glycyrrhizin low producing strain	11.059
DRR006524	Root Summer glycyrrhizin low producing strain	10.944
DRR006525	Leaf Summer glycyrrhizin high producing strain	1.620
DRR006526	Leaf Summer glycyrrhizin high producing strain	1.611

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	28.491
SRR2868004	Drought Stress (root)	29.138
SRR2967015	Control (root)	24.124

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	1.535
SRR9715740	Leaf	0.193
SRR9715741	Leaf	0.244
SRR9715739	Root	5.025
SRR9715742	Root	9.086
SRR9715743	Root	9.669

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	8.515
SRR8749028	MeJA induced 9h	1.946
SRR8749029	MeJA induced 9h	1.530
SRR8749030	Uninduced	0.064
SRR8749031	Uninduced	0.039
SRR8749032	Uninduced	0.092

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	21.021
SRR8400027	Control - Root	22.364