Gene detail

Gene detail information of Glyur000074s00005522

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT5G06310.1	3.00E-72	Nucleic acid-binding, OB-fold-like protein
NR	XP_007160544.1	0	hypothetical protein PHAVU_002G330500g [Phaseolus vulgaris]
Swissprot	tr\|Q6NKX5\|POT1B_ARATH	4.00E-90	Protection of telomeres protein 1b
trEMBL	tr\|V7CT45\|V7CT45_PHAVU	0	Uncharacterized protein {ECO:0000313\|EMBL:ESW32538.1}

Sequence

Transcript Sequence

>Glyur000074s00005522.1
ATGGGATTTTGGGGCGATTACAGGTTTCTTCAGTTACGAGATGCGCATACGTGTGTGAATCAGAAAGTGAACCTCATTGCCATTGTTCTTGAGTTTGGCTTCCCCAAGACAACTCGGGGCTCTGATATCTGCTGTTCCATCAGAATAGTCGATGAAACACATCAGCACACTGGCATGGCTGTTAACATTTTTGATGAAGATGCAGAAAAACTTCCCCATGTTGCAGCTGCTGGAGATATAATCCAGCTTCATCGTGTTACGGTGAGGACTCACAATGGGGAGGTAAATGTTGTTTTCAGCAAAAAATTTTCCTCTTTTGCTTTATATAAAGGGAAAGGTGATCATGATTTTTCCCCCTATCAAGTTTCTTCAATGTTTCGCCCCAAAGATGAGGACAAAATCTTCATAGCCGATCTTAGAAAATGGCTGGCCAATTTTCGGCCCCGTGAAGTTNCAAGTGATTTTCCAATGTTCAGAGAGATCAAGGAAGGTCACTTTAATTTGGCATGCAAGTTGTTACCGTTCCAAGGTGCTGATCCTTCTTCACACTTTTTTGTTGTTTTATACATNAAGATACTTCATTGTGTGGAGGCTGCAAAACATAAATGGTTTGTCCATGTTTGGGATGGCACTGACGCCCCACCAAATGCCATATATACAAAGCTGGAAGATGAAACTAAATCTCCACTTCCGTTACAACTGGAACCTTTGCCTTTGTCAAGAGAGTTATTATGCACTTTTCCTAATGTTGGATCCATCTTGAGGATAACTTTTGATCTACCCGTTGACGAAATTCAACTCCGTGTTCTTATCATTGGTAAATGGGTCAAGTTTGTCAACGTACGACTCAAGGTGCATGCAGGACTTTGGTTGGGTGTTTTTACCCCGTTTACAAAGCTTCGATATACACCAAACGAGGACTGTCTTATTGTAGAACGCCAAAGGTTGTATGATGAGCGGATATCCTTGAAAACAGGAAGAATGCCTCAGTGCAGCTTACCCAAGTCTTTCTGTATTACAGAGGTTAATCATGATCGTGTGCGGCATTTTACTTTAATGGATGTACTCACCCATTCCGAGGTGACGGCTAAATTCAAGTGTGCTGTTCGGGTGGTAGCAGTAATGCCATGCCAAGCTGAAGAGCTCTGCGNTCCTGATGGGACATATCTAATGAGGCTGACCCTAGAGGATCCAACTGCTAGAATTCATGCTTATGTAGCTGCTGAGGATGGGGAGACTCTTTTTGATGGTTATCCGGGCATTGACAAGGTGAAAAAGAAGCTGAACATATTACTTGGAGTAGCGGAATGTGGTGTTGATATTATTGGGGTAAAGGATACTCCAAGAAATCCGCCATGGGTCACTGTCTGTCTTAAATCATACTATCTCAACAAAGATGATATGTGGGCCACTAGAAACTATCGAATATTTGACACCAGAATGGTGGAAGAAGCCTTGACATAGGCTTTTTCTTTCTTTCTTTTGAAAAGGGTACGTCCTAGGGGATGTTTTGTTTATATGGATGGGTGCGCACTAGAACTAGAAAATGTATCCATGTTCTGCCAGGATAGGATGTGCATAGAACGGACGAAGACACTTTTTTTTGCTTTTTGTCAGGGCGGTCATGATACTGGCTTTCGAATGTAAAAAAATATATAATATGTAAATTAACTTTGCTTATCACATATGCCCGTTATTTATCTTATTGTAGTTTACCTTATGTTGGTGGTGTTGACGTATAATACTACAATAATAATACTACAATCGAACTAATTTACAAA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00074	44959	49204	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0000723 telomere maintenance

cellular_component
GO:0000784 nuclear chromosome, telomeric region

molecular_function

GO:0003677 DNA binding

GO:0043047 single-stranded telomeric DNA binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000074s00005522.1	PF02765.12	POT1	11	142	9.10E-24

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	18.248
SRR1783600	control	18.332
SRR1783602	moderate drought stress	31.273
SRR1811619	moderate drought stress	30.900

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	32.426
DRR006520	Root Summer glycyrrhizin high producing strain	32.292
DRR006521	Root Winter glycyrrhizin high producing strain	7.067
DRR006522	Root Winter glycyrrhizin high producing strain	6.888
DRR006523	Root Summer glycyrrhizin low producing strain	27.493
DRR006524	Root Summer glycyrrhizin low producing strain	27.113
DRR006525	Leaf Summer glycyrrhizin high producing strain	11.929
DRR006526	Leaf Summer glycyrrhizin high producing strain	11.763

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	12.892
SRR2868004	Drought Stress (root)	13.363
SRR2967015	Control (root)	13.807

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	7.327
SRR9715740	Leaf	8.194
SRR9715741	Leaf	8.675
SRR9715739	Root	16.692
SRR9715742	Root	10.575
SRR9715743	Root	11.576

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	29.092
SRR8749028	MeJA induced 9h	19.774
SRR8749029	MeJA induced 9h	19.515
SRR8749030	Uninduced	4.986
SRR8749031	Uninduced	2.970
SRR8749032	Uninduced	7.495

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	19.220
SRR8400027	Control - Root	18.203