Gene detail

Gene detail information of Glyur000074s00005520

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT1G67940.1	8.00E-95	non-intrinsic ABC protein 3
NR	XP_007160546.1	7.08E-154	hypothetical protein PHAVU_002G330700g [Phaseolus vulgaris]
COG	YP_007299289.1	1.00E-61	ABC-type phosphate transport system, ATPase component [Thermoanaerobacterium thermosaccharolyticum M0795]
Swissprot	tr\|Q9C9W0\|AB17I_ARATH	6.00E-136	ABC transporter I family member 17
trEMBL	tr\|V7CTD9\|V7CTD9_PHAVU	3.00E-154	Uncharacterized protein {ECO:0000313\|EMBL:ESW32540.1}

Sequence

Transcript Sequence

>Glyur000074s00005520.1
GGAGAGGGGAGGAGTGATGTGGTGGGGGAAGCAGGAGAATCAAGAATGAGAGATGACCGGGGCAGGCTCTTTCTGCTCTCATTCACCAATTCATATTCCTTCTTATTCATTATCCTTTCTATCTATTGTATCTATTTTCTATCTATATATCATCACTCCCCAGTCNCCACTAACTAGCGACTATGTCTTCTCCTCTCTTAGAGGAATGCAGGGAACACCTGTTGGAGGTGGAGGAGGATGGCTACGCTAACGGAAGTGGCGCCACCAAACCCAAATTCCAGATAAGAAATCTGACCAAAGTCTCNGACGATGGGGTTCCCATACTGAAGGGCATCACCGTGGACATCCCCAAGGGCGTCATCGTTGGGGTCATTGGCCCCAGCGGCAGCGGAAAGTCAACGCTCCTGAGGGCCCTCAACCGCCTCTGGGAGCCTCCCTCCTCCTCCGTCTTCCTCGACGGCCACGACATCTCCCACCTCGACGTCCTCTCCCTCCGCCGCAAGGTCGGGATGCTCTTTCAGCTCCCTGCCCTCTTTCAAGGCACGGTTGCGGACAACGTGAGGTATGGGCCACAGCTGAGAGGGAAAAAGCTAACCGATGAGGAGGTGCGGGGGTTGCTGGTGATGGCAGACCTCGATCCTTCTTTCTTGGACAAGTCCGGCGCTGATCTCTCCGTCGGCCAAGCTCAAAGGGTTGCACTTGCCAGGACTTTGGCTAACTCACCTGAGGTGTTGCTGCTGGATGAGCCTACTAGTGCGTTGGATCCAATATCGACAGAGAACATAGAGGAAGCCCTGATGAAGCTGAACAAGAGTCGGGGGATGACGCTTGTCATGGTTTCTCACAGCATCAAACAGATCCAGAGGATGGCTGACATTGTGTGCCTNCTTGTTGATGGCCAAATCGTTGAGGTCCTCAAGCCTGACAAACTCTCCCAAGCCAGCCACCCCATGGCACAGAGGTTTCTTCAACTCAGTTCTTAATTTGGGGTCCCCAATCTATGCCGCCTTCAACTTGGGGAATGTCATTCTCCACCGATAAAGAAATGTCATGATATTGGGGAATGTCTTCGACTTGCAATGGTTCTGGTTCTGGTTCTGGTTCTGGTTCTGGATGTCAACATATGCTCAAGGAATACTTACACTGGTAGTCATTTGCACATAGTGCTCATTGTGTCTAATTTAATTAATAGGAATGGTTAAACATTTGGATGCATTAATTATTGTTTTTAAGGAAAAATCTAGCATCCATCCATATATTATCAATTACAAGTGAAACTTAATCCATCTTTTCAGGACAATGCCCACGCAACTTGCCAATGCATTTTGACTTAATTATCGATCTTCCATCTTCAATCAAATTTAATNCACAAGG

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00074	38505	40376	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

molecular_function

GO:0005524 ATP binding

GO:0016887 ATPase activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000074s00005520.1	PF00005.22	ABC_tran	48	191	1.90E-31

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	16.284
SRR1783600	control	16.106
SRR1783602	moderate drought stress	16.141
SRR1811619	moderate drought stress	15.593

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	11.989
DRR006520	Root Summer glycyrrhizin high producing strain	11.843
DRR006521	Root Winter glycyrrhizin high producing strain	2.524
DRR006522	Root Winter glycyrrhizin high producing strain	2.366
DRR006523	Root Summer glycyrrhizin low producing strain	12.867
DRR006524	Root Summer glycyrrhizin low producing strain	12.258
DRR006525	Leaf Summer glycyrrhizin high producing strain	12.694
DRR006526	Leaf Summer glycyrrhizin high producing strain	12.960

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	40.489
SRR2868004	Drought Stress (root)	30.344
SRR2967015	Control (root)	28.448

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	21.558
SRR9715740	Leaf	31.873
SRR9715741	Leaf	14.627
SRR9715739	Root	20.524
SRR9715742	Root	9.696
SRR9715743	Root	10.477

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	14.859
SRR8749028	MeJA induced 9h	14.625
SRR8749029	MeJA induced 9h	11.452
SRR8749030	Uninduced	4.922
SRR8749031	Uninduced	1.799
SRR8749032	Uninduced	4.226

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	28.726
SRR8400027	Control - Root	28.959