Gene detail

Gene detail information of Glyur000074s00005510

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT3G17880.1	8.00E-100	tetraticopeptide domain-containing thioredoxin
NR	XP_003530968.1	0	PREDICTED: TPR repeat-containing thioredoxin TDX-like [Glycine max]
COG	NP_816649.1	1.00E-17	thioredoxin family protein [Enterococcus faecalis V583]
Swissprot	tr\|Q8VWG7\|TDX_ARATH	6.00E-154	TPR repeat-containing thioredoxin TDX
trEMBL	tr\|I1KQM0\|I1KQM0_SOYBN	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA08G06010.1}

Sequence

Transcript Sequence

>Glyur000074s00005510.1
GTGGTGGGTGGATGGTAAAGTAGTATACCCTAAAGTACTGCAGAGTGCAGAGAGAGTGNAGTGGTGTTTGGTTCGTTCGTTTTCGTTGTGGTTGGTCGATGGATGCGGGGAAAGTGAGAGAGCTAAAGCAATTGATAGAGTCATGCAAGTCCAATCCTTCCCTTCTCCACAACCCTTCTCTTTCCTTCTTCAAGTCTTACCTTCTNAGCCTTGGTGCTCGCATCCCTCCCCAACCCAAAACGGAACCTGTTGATGATTGCATGCCAGATCCTGCTTCATCCGCAGAAGATGAAAATGATATTGTAGAATCTGATATTGAGTTGGATAATACTGATGTCATCGAACCTGATAATGACCCGCCTCAAAAGATGGGAAATCCTTCTGCTCAATTGGATCAGGCGCTGGACCTACTGACAGAAGCCATTTTGTTGAATCCGCATTCAGCCATACTTTATGCCACTAGAGCTAGTGTATTTATAAAATTGAAGAAACCGAATGCTGCTATCCGTGATGCTGAGACTGCCTTGAAGATTAATCCAGACTCAGCTAAAGGATACAAAATACGAGGAATGTCAAGGGCTATGTTGGGACTCTGGGAAGAAGCAGTGAGTGATCTTCGCGTGGCTTCAAAGTTAGATTATGATGAGGAGATTGGTATGGCACTTAAAAAGGTTGAACCTAATGCTCACAAAATTGAGGAGCATAGGAGAAAATATGAACGCTTACGAAAGCAAAAGGAGCTGAAAAGAGCTCAACACAAGAAGCAACAACATGCTGAAGCTCAAGATAAAGAAGCATTATCTGCTTTAAAAGATGGCAAGTCTTTGTATTTCCATCTTCTTGATGGGCAAGTGATTGGTATTCACTCTGTTGGTGAATTGGAAACGAAGTTGAGTGCTGCATCAAAGACATCTCGCTTGGCAATCCTGTATTTTACTGCAACATGGTGTGGCCCTTGTCGCTTCATTTNGCCTATTTATACAAGCTTGGCTGAGAAGTATCCAAAAGTGGTTTTTTTAAAAGTTGACATAGATGATGCAAGGGATGTTGCTGCACGCTGGAATATTAGCAGTGTTCCTACATTTTTCTTTGTTAAAAATGGCAAAGAGGTCGACAGTGTGGTGGGGGCAGACAAAAACACACTCGAAATGAAGATTGCGCAACATGCTGGCTCTCTTAAGTGAATACCTTATAAGAACCCTGATACAATAATTTTTCCATGTTTCTTCTGTTTACATGTCCATGGTGTGATACAATAGCGAGAGTTTCAATGTAATGGTTTGATGTTTCTGCTGTCCGCTTGCGTATAAAAAATGTTAATGTTAATTTGGAATATATATTTCAAATTTTCAAGCTGATTTTAGGTTTATGACTGTAATGGGGAAGCAAAATCATAACGCAGGAGATAGTTGTGGGCGGTTCAGTTTTAGTTTTACTTGTTTGTATTTGTTATTTGACCATTTTTGAAGTGAAGCCTTGTTCTTCTTGAGCTTCTTTTCGAATGTGACTTGAGGAAGTGTATTTTCATCTGCCGAGGAGTGCTGGGGGTTCGATCGAGCTTTCTGTAACATGTTCATTTNCAAAGAGAAATAACTGCTAATTGCATGAACGTAAAAATTGACATTCGCTTTTG

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00074	1370	5282	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process

GO:0006662 glycerol ether metabolic process

GO:0045454 cell redox homeostasis

molecular_function

GO:0005515 protein binding

GO:0015035 protein disulfide oxidoreductase activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000074s00005510.1	PF13414.1	TPR_11	97	147	1.50E-11
Glyur000074s00005510.1	PF00085.15	Thioredoxin	269	355	8.30E-26

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	16.784
SRR1783600	control	16.589
SRR1783602	moderate drought stress	36.928
SRR1811619	moderate drought stress	36.377

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	50.809
DRR006520	Root Summer glycyrrhizin high producing strain	50.657
DRR006521	Root Winter glycyrrhizin high producing strain	19.193
DRR006522	Root Winter glycyrrhizin high producing strain	18.503
DRR006523	Root Summer glycyrrhizin low producing strain	40.649
DRR006524	Root Summer glycyrrhizin low producing strain	40.813
DRR006525	Leaf Summer glycyrrhizin high producing strain	15.176
DRR006526	Leaf Summer glycyrrhizin high producing strain	15.380

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	65.347
SRR2868004	Drought Stress (root)	64.228
SRR2967015	Control (root)	65.861

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	22.058
SRR9715740	Leaf	24.989
SRR9715741	Leaf	24.452
SRR9715739	Root	13.350
SRR9715742	Root	31.301
SRR9715743	Root	31.431

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	38.038
SRR8749028	MeJA induced 9h	25.704
SRR8749029	MeJA induced 9h	28.273
SRR8749030	Uninduced	7.548
SRR8749031	Uninduced	4.531
SRR8749032	Uninduced	8.525

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	53.702
SRR8400027	Control - Root	49.688