Gene detail

Gene detail information of Glyur000073s00007827

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT5G39850.1	3.00E-87	Ribosomal protein S4
NR	XP_004499428.1	3.35E-132	PREDICTED: 40S ribosomal protein S9-2-like [Cicer arietinum]
COG	NP_614755.1	3.00E-36	30S ribosomal protein S4 [Methanopyrus kandleri AV19]
Swissprot	tr\|Q9FLF0\|RS92_ARATH	6.00E-118	40S ribosomal protein S9-2
trEMBL	tr\|I1JZQ6\|I1JZQ6_SOYBN	4.00E-132	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA05G01180.1}

Sequence

Transcript Sequence

>Glyur000073s00007827.1
ATGCACTCCATCAGCTCCAGCTGCAGAAACCTAGAGCACCAGATAGTAGAGGAGCCGATAGAGAACAGCAGCAATGGTGCACATGGGAAAACCTTTAAGAAGCCTCGTCGTCCGTACGAGAAGGAACGTTTGGATGCAGAGTTGAAGCTGGTCGGGGAGTACGGGCTTCGGTGCAAGAGGGAGTTGTGGAGGGTTCAGTACGCCCTCAGCCGCATCCGTAACAATGCGAGGAATCTTCTCACGCTGGACGAGAAGAACCCTCGCCGGATCTTCGAGGGTGAAGCACTTCTACGGAGGATGTTCCGTTACGGTCTCCTCGATGAAACTCAGAACAAGCTCGATTACGTCTTGGCTCTCACCGTTGAGAACTTCCTCGAGCGTCGCCTTCAGACACTCGTCTTCAAATCTGGAATGGCCAAGTCCATTCACCATGCTAGAGTCCTCATTAGGCAGAGGCACATCAGGGTTGGGAGGCAGGTTGTGAACATCCCATCTTTCATGGTGAGGGTTGATTCACAGAAGCACATTGACTTTTCACTCACAAGTCCNCTTGGTGGTGGTCGTCCTGGACGTGTGAAGAGAAAGAACCTCAGGGCTGCNGCTAAGAAGGCTTCTGGTGGTGACGGTGATGAGGAGGATGAAGATTAAATTATGAATAGCTTGGGCTTAGATCTTGTGCCAGCATTTTATTCTGTTCGGTAGACTTTTTAGATTTTTATCATGCTCGACTCTTANAATTTTTCCATCCTTGTTTCTTGTGTGAGGAAAGTCTTTGCCTGAGATATCTTGTTTTTGAACTGTCCTTTTTCGAAGTATTAAGTTTTGCTCCAATACCTGTGCTGTTCATTGAATCGATGGTTGATGGGCTTAATGGCATTGGTTTAAAGTATTGCATAGGAGTTTGAATACACCGTGTTATTGGTTTTTGTTCTTTTAATGGCAGAATCATAAAGTACCCAAGGCCTGGCTTAGTTCATGTTTCATGGAGTCTACCTCCTTCTCGTGCTTATATGAATATTATAGGTCGATAGAATTATGAGCTTTAAATTGAAGACCTTTTTTTCTTCATACAAGTTTATAGGAGGAAATCCAGTGCTTAGTAATTTCAAGGCAATTGCTAATTGCTAAAAACGATACATGTGCAAGTGTTTTGCTGAACACAGCTATGAAGAGG

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00073	377617	379590	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0006412 translation

cellular_component

GO:0005622 intracellular

GO:0015935 small ribosomal subunit

molecular_function

GO:0003723 RNA binding

GO:0003735 structural constituent of ribosome

GO:0019843 rRNA binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000073s00007827.1	PF00163.14	Ribosomal_S4	28	126	2.30E-25
Glyur000073s00007827.1	PF01479.20	S4	127	171	6.00E-14

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	86.952
SRR1783600	control	87.485
SRR1783602	moderate drought stress	64.935
SRR1811619	moderate drought stress	64.544

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	230.518
DRR006520	Root Summer glycyrrhizin high producing strain	229.431
DRR006521	Root Winter glycyrrhizin high producing strain	78.930
DRR006522	Root Winter glycyrrhizin high producing strain	77.249
DRR006523	Root Summer glycyrrhizin low producing strain	161.223
DRR006524	Root Summer glycyrrhizin low producing strain	161.643
DRR006525	Leaf Summer glycyrrhizin high producing strain	46.169
DRR006526	Leaf Summer glycyrrhizin high producing strain	46.518

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	418.591
SRR2868004	Drought Stress (root)	228.378
SRR2967015	Control (root)	209.968

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	146.491
SRR9715740	Leaf	138.819
SRR9715741	Leaf	123.594
SRR9715739	Root	276.968
SRR9715742	Root	224.941
SRR9715743	Root	221.514

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	271.700
SRR8749028	MeJA induced 9h	111.015
SRR8749029	MeJA induced 9h	151.251
SRR8749030	Uninduced	27.941
SRR8749031	Uninduced	12.154
SRR8749032	Uninduced	26.494

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	298.671
SRR8400027	Control - Root	258.012