Gene detail

Gene detail information of Glyur000073s00007818

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT4G36380.1	2.00E-177	Cytochrome P450 superfamily protein
NR	XP_007156098.1	0	hypothetical protein PHAVU_003G258400g [Phaseolus vulgaris]
COG	YP_007055574.1	7.00E-58	cytochrome P450 [Rivularia sp. PCC 7116]
Swissprot	tr\|Q9M066\|C90C1_ARATH	0	3-epi-6-deoxocathasterone 23-monooxygenase
trEMBL	tr\|V7CD14\|V7CD14_PHAVU	0	Uncharacterized protein {ECO:0000313\|EMBL:ESW28092.1}

Sequence

Transcript Sequence

>Glyur000073s00007818.1
CCTAGATCTTCAGAATCTCCCTCTCAATATGTGTATCCCCACTCTCATTTATAACTCTCCCCCTAGGGAAGGACAAAAAGAGCTTCCTTTTCTTCCTTTCACGTATCAAACATTCAAGACTCCCCCCTCTCTCTCTCTCTCTTCTCTCTCTCTCTCTATTTTTCCCTTTTATTTTTCACCCAAACAAAAGCACAGAGAAGAGTGAATTAGTACAATAACAGCTGCATGAACTGAAACTGAGAAGAAGTCACCACGCTATTGCTAGTGCCATAACTCAACTGATATGATCAGTGGCTNAAACAAGCTATATCGCTAGCTAGGGTTTCAGAGTCATCGATCGATCCGAAGAAAGGGAATTAAAAAGAAGAGTTTTTTATGATATGGGATGGATTATAGGACTATGGGCTCTGATGGGTATCCTTCTATTTTGGTGGTTTTTGTGTGTGAAGAAGAAGAAGAAGAAGAAGAAGAAGGAGAATGATAAGGTGAAGAAGAAGAAGAATGGCAAAGTTCCAAAAGGGAACACGGGTTGGCCTTTGCTTGGAGAGACCCTTGATTTCATTGCTTGTGGATACACCTCTAACCCTGTCAGCTTCATGGAAAAGCGCAAGTCTCTGTATGGTAAAGTGTTTAAGACAAGCATTTTGGGAAGTGGTGTGATTGTGTCGACAGAGGCGGAAGTGAACAAGGTGATACTGCAGAACCAGGGGAACCTGTTCGTCCCTGCTTATCCAAAATCGGTTAGAGAACTAATGGGAGAACACTCTATACTCCAAATGAACGGGAACATGCATCGCAGACTTCATGCACTCCTTGGAGGCTTCCTCCGATCCCCACAACTCAAAGCNCGAATCACCACAGATATTGAGCACTCTGTCAAACAATGCTTTGCTTCTTGGAGGACCCACCAACCAATCTACATTCAAGATCAAGTCAAAAAGGTTACGTTTACTATTTTGGTTAAAGTTCTGATGAGCATTGGTCCTGGTGAAGATTTAGANATGTTGAAGAGAGAATTTGAAGAGTTCATCAAGGGGTTGATTTGCTTACCCCTCAAGTTTCCAGGAACAAGACTATATAAATCCTTGAAGGCTAAGGAGAGAATGATGAAGATAGTGCAGAGGATAATAGAGGAAAGGANCAATAATATGCATAAGGATTCGGAGAAGGGTGGTGCAGCGAATGATATAGTGGATGTGCTCTTACAGGATNATAAGGGGGGTACTGACACCAGCTCAATCGGGTCGTTGAAGGATATGAGCGAGAACATCATTGAGATGATGATCCCTGGGGAAGAGACTCTTCCCACGGCTATGACCATGGCTGTCAAATTTCTCAGCGACTANCCCCTTGCTCTATCCAAATTAGTGGAAGAGAACATGGAATTGAAGAGGAAGAAGAATTGTACTGATAATTATGCATGGACTGACTACCTGTCACTGCAATTTACTCAACATGTTATCAGTGAAACTCTTAGAATGGCAAATATTGTCAATGCTATTTGGAGAAAAGCAGTCAAAGATGTAAATATTAAAGGGTACCTAATTCCCAAGGATTGGTGTGTTGTGGCATCTCTTACTTCTGTTCATATGGATGGCATGAACTATGAAAACCCTTTTGAGTTTGATCCATGGAGATGGGAGAAAATTGGAGCTGGGACTAGTAACAACTGTTTTACACCATTTGGTGGTGGACAGAGACTTTGTCCTGGGATAGAACTCTCTAGGCTAGAGCTCTCTATTTTCCTTCACCATCTGGTTACAACTTACAGATGGGTTGCTGAGAGGGATGAAATTATTTACTTTCCAACAGTCAAGATGAAGAGGAAGCTCCCAATTAGTGTTACAACCATTAACACCTGATTGAGTTGGAGAATAAAGGGATTAATCTTGTACAATATAATAGATAGATCANAGATGTATGTATTAGTTTCAACCTAGAGGGTAGAATTTGAGTAGACAAAACGATATGGTGTCAAAAAGGGGGCTATGTGCTCTTATGTTAGCTCTAGTGTCACATCGATTTTCTGAAGAGAAAGGTGCCTTTGGGCCCTCCTTATG

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00073	298139	305040	+

Gene family

Gene family	subfamily
Cytochrome P450 Family	CYP90C1

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
K12637	CYP90C1, ROT3	EC:1.14.13.112	Brassinosteroid biosynthesis	map00905

Gene Ontology

biological_process
GO:0055114 oxidation-reduction process

molecular_function

GO:0005506 iron ion binding

GO:0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen

GO:0020037 heme binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000073s00007818.1	PF00067.17	p450	45	468	5.20E-54

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	0.035
SRR1783600	control	0.035
SRR1783602	moderate drought stress	0.000
SRR1811619	moderate drought stress	0.000

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	0.313
DRR006520	Root Summer glycyrrhizin high producing strain	0.309
DRR006521	Root Winter glycyrrhizin high producing strain	0.000
DRR006522	Root Winter glycyrrhizin high producing strain	0.000
DRR006523	Root Summer glycyrrhizin low producing strain	0.000
DRR006524	Root Summer glycyrrhizin low producing strain	0.000
DRR006525	Leaf Summer glycyrrhizin high producing strain	12.119
DRR006526	Leaf Summer glycyrrhizin high producing strain	11.883

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	0.188
SRR2868004	Drought Stress (root)	0.591
SRR2967015	Control (root)	0.362

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	19.336
SRR9715740	Leaf	18.273
SRR9715741	Leaf	24.363
SRR9715739	Root	0.000
SRR9715742	Root	0.951
SRR9715743	Root	0.480

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.000
SRR8749028	MeJA induced 9h	0.000
SRR8749029	MeJA induced 9h	0.000
SRR8749030	Uninduced	0.000
SRR8749031	Uninduced	0.000
SRR8749032	Uninduced	0.000

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	0.098
SRR8400027	Control - Root	1.699