Gene detail

Gene detail information of Glyur000073s00007816

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT4G36250.1	1.00E-174	aldehyde dehydrogenase 3F1
NR	XP_003547955.1	0	PREDICTED: aldehyde dehydrogenase family 3 member F1-like [Glycine max]
COG	YP_007068020.1	8.00E-137	aldehyde dehydrogenase [Calothrix sp. PCC 7507]
Swissprot	tr\|Q70E96\|AL3F1_ARATH	0	Aldehyde dehydrogenase family 3 member F1
trEMBL	tr\|I1MN90\|I1MN90_SOYBN	0	Aldehyde dehydrogenase {ECO:0000256\|PIRNR:PIRNR036492}

Sequence

Transcript Sequence

>Glyur000073s00007816.1
ATGGACATTGGTAGGGAAGTAGAAGNGACCGTACGAGAGTTGAGGCAATACTTCAAAACTGGAAGAACCAGAAGTGTGACATGGAGGAAAAACCAGCTCAAGGCTCTCCTAAAACTTGTTCATGACAAGGAAGATGCTATATATAAGGCTCTCCACCAAGATCTTGGGAAGCACCCTGTTGAAGCTTACCGTGATGAGAGAGATATCCCTTTTCTTTTCTTCCCTGCAAAAGGAGAAGTGTTGTCAGAACCACTTGGTGTGGTTCTTATTTTCTCTTCATGGAACTTTCCAATCATGCTGGCGTTGGATCCATTAATCGGGGCAATATCTGCTGGAAATGTTGTAGTCATAAAACCATCAGAGCAATCTCCAGCATGCTCTTCTTTTCTTGCCAATACCCTTCCTCTCTACTTGGACTCTAATGCCATAAAGGTGATTGAGGGTGAAGCAGAAGTCTGTGAACAACTACTGCTACAGAAATGGGACAAAATATTCTTCACTGGAAGTACACGTGTGGCAAGCATAATCTTGTCTGCTGCTGCAAAGAATTTAACTCCTGTTACTCTAGAGCTGGGTGGAAAATGCCCGGCTATACTTGATTCCCTTTCCAATCCTTCAGATTTTAAGTTGGCAGTCAAAAGAATCATAGGAGCGAAGTGGGGATCTTGTGGCGGACAAGTATGTTTAGGCGTCGACTATGTGCTTGTTGAGGAGAAGTTCTCATCTGATCTGATAGAACTATTAAAGAAGACCATCAGAAATTTTTTTGGTGACAACCCAATAGAGTCAAAGGCAATTTCCAGAATAATAAGCAAGCAGCACTTTGAGAGACTATGCAATCTTCTTAAAGACCCTCTTGTTGCGGCTTCCATCGTTCATGGTGGTTCAGTCGATGAAGAAAACCTGTTCATTGAGCCCACAATCTTGTTAGATCCACCACTAGACGCTCAGATCATGACCGAAGAAATCTTTGGCCCACTGCTTCCAGTGATCACATTGAATGAAATTCAGGAAAGTATTGAATTTATCAATTCAAGGCCAAAACCTCTTACCATTTATGCCTTCACCAAAAATAAAACTCTCAAGAGAAGGATTCTATCAGAAACGTCCTCAGGAAGTGTCACATTTAATGACACATTGGTTCAATTCTTATGTGATTCGCTACCATTTGGAGGTGTTGGCCAGAGTGGTTTTGGAAGGTACCATGGGAAGTACTCCTTTGACACTTTCAGCCACGAAAAAGCTGTAATGCATAGACATCTTTTCCTTGAAATTGAGCCAAGGTACCCTCCTTGGAATAGGTTCAAGCTAGAATTTCTAAGATTGGCATACAGGATGAAATACTTTGGACTATTACTGCACATGCTGGGCTTGAAAAAATACAACTAG

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00073	287761	291136	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
K00128	ALDH	EC:1.2.1.3	Glycolysis / Gluconeogenesis	map00010
			Ascorbate and aldarate metabolism	map00053
			Pyruvate metabolism	map00620
			Fatty acid degradation	map00071
			Glycerolipid metabolism	map00561
			Valine, leucine and isoleucine degradation	map00280
			Lysine degradation	map00310
			Arginine and proline metabolism	map00330
			Histidine metabolism	map00340
			Tryptophan metabolism	map00380
			beta-Alanine metabolism	map00410
			Insect hormone biosynthesis	map00981
			Limonene and pinene degradation	map00903
			Chloroalkane and chloroalkene degradation	map00625

Gene Ontology

biological_process

GO:0006081 cellular aldehyde metabolic process

GO:0008152 metabolic process

GO:0055114 oxidation-reduction process

molecular_function

GO:0004030 aldehyde dehydrogenase [NAD(P)+] activity

GO:0016491 oxidoreductase activity

GO:0016620 oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000073s00007816.1	PF00171.17	Aldedh	13	416	1.10E-74

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	1.494
SRR1783600	control	1.590
SRR1783602	moderate drought stress	1.125
SRR1811619	moderate drought stress	1.090

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	0.251
DRR006520	Root Summer glycyrrhizin high producing strain	0.234
DRR006521	Root Winter glycyrrhizin high producing strain	0.502
DRR006522	Root Winter glycyrrhizin high producing strain	0.254
DRR006523	Root Summer glycyrrhizin low producing strain	0.545
DRR006524	Root Summer glycyrrhizin low producing strain	0.494
DRR006525	Leaf Summer glycyrrhizin high producing strain	7.104
DRR006526	Leaf Summer glycyrrhizin high producing strain	7.151

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	0.054
SRR2868004	Drought Stress (root)	0.182
SRR2967015	Control (root)	0.045

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	15.416
SRR9715740	Leaf	6.035
SRR9715741	Leaf	8.423
SRR9715739	Root	0.539
SRR9715742	Root	1.708
SRR9715743	Root	1.318

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.067
SRR8749028	MeJA induced 9h	0.000
SRR8749029	MeJA induced 9h	0.096
SRR8749030	Uninduced	0.000
SRR8749031	Uninduced	0.175
SRR8749032	Uninduced	0.098

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	0.637
SRR8400027	Control - Root	1.313