Gene detail

Gene detail information of Glyur000073s00007793.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT4G36180.1	0	Leucine-rich receptor-like protein kinase family protein
NR	KHN00494.1	0	Putative LRR receptor-like serine/threonine-protein kinase [Glycine soja]
COG	YP_004775215.1	2.00E-56	RHS repeat-associated core domain-containing protein [Cyclobacterium marinum DSM 745]
Swissprot	tr\|C0LGS2\|Y4361_ARATH	0	Probable LRR receptor-like serine/threonine-protein kinase At4g36180 (Precursor)
trEMBL	tr\|V7CFQ1\|V7CFQ1_PHAVU	0	Uncharacterized protein {ECO:0000313\|EMBL:ESW28115.1}

Sequence

Transcript Sequence

>Glyur000073s00007793.1
ATGCTACTGTGCGCACCCTTCTTATCATGCGCCCAGCGTAGCTCCGTCACCGAGATTCAAGCCCTAACGTCGTTCAAGCTCAACCTCCACGATCCTCTTGGCGCGCTCAACGGTTGGGACCCGTCGACGCCGGCGGCTCCATGCGACTGGNGTGGCGTTTCATGCAATAACTACCGAGTCACTGAGCTCCGCTTGCCTCGCCTTCAACTCGGTGGCCGACTCAGTGACCGCATTTCGGACCTTCGCATGCTCAAGAGTCTGAGCCTTCGTTCCAACTCTTTCAACGGCACGGTTCCTCCATCGCTTTCTAAATGCACGCTCCTACGCGCCGTTTTCTTGCAGGACAACTCATTCTCCGGTGAAATCCCGCCGGAGATCGGAAACCTCGCCGGCCTTCAGATTCTCAACGTCGCCGGGAACAATCTCTCCGGTGTAATTCCCGGCGAGCTCTCCCTCGGCCTGAAGTACGTTGACCTATCGGGGAACGCCTTCTCCGGCGAGATTCCGAGCACCATTGCCAGTCTTTCTCAGCTTCGGCTTATGAACCTNTCGTACAACCAGTTCTCCGGCCAGATTCCGGCGAGCATCGGGGAGCTTCAGCACCTGCAATATCTCTGGCTCGACCACAACATTCTCGGAGGAACCCTACCTTCGGCCCTCGCCAATTGTTCTTCGCTCGTGCATATGAGCGCGGACGGGAACACAATCGCCGGCGTTTTGCCACCGGCGATTTCGGCTCTCCCGAAGCTTCAGGTGTTATCCCTCGCACAGANCAATCTTACCGGCGCCGTTCCCGCTTCCATTTTCTGCAACGCGCCGTCGCTTCGCGTTGTTCAACTAGGGCTTAACGGTTTCACTGATTTCGCTGAGCCTGAGATTGAACGATGTTTCAGCGCTCTTGAGGTTTTGGAAATTCAGCGCAATCGCGTGCATGGAAAAATTCCGTCNTGGTTAACCAATGTTACCACCATAACGGTGCTCGATGTTTCGGACAATGCGCTTTCCGGTGAGATTCCGCCGGAGATAGGAAACCTCGAGAAATTGAAGGAGTTGAAGATTGCCGGCAATTCATTCTCTGGCGCGATTCCGCCTGAAATCGAGAAATGCGGTTCCCTGCGTGTTGTTAATTTTGAAGATAACCGTTTTTCCGGTGAAGTTCCTTCGTTTTTAGGCTATTTGACAGGGTTGACGGTTCTGTCCCTTGGTGGGAATCACTTCTCTGGTTNGGTTCCGGTGAGTTTTGGTAATCTTGCATCTCTTGAAACCTTGAGTTTGAGCGGTAATAGCTTGAGTGGTAGTATGCCAGAGGTGTTAACCGGGTTGAGGAATTTGACAACATTGGACCTCAGCGGAAACGATTTTTCCGGTCATGTTTCTGGGAGAATTGGGAATCTGAACAGATTGATGGTTCTGAATCTGAGTGGGAATGGCTTCTATGGAGGAATTCCTGCTAGCTTGGGGAATCTTTTCAGGCTAACTACACTTGACTTGAGCAAACAGAATCTCTCTGGTGAATTGCCATTTGAGCTTTCGGGGCTACCTAGTCTTCAAATAATTGCTCTGCAGGAGAATAAGTTGTCTGGGAATGTCCCTGAAGGGTTTAGCAGCTTGAGGAGTTTGCAATATATGAACCTCAGCTCTAATGGGTTTTCTGGTCATATTCCTAAAAATTATGGCTTTCTTCAATCATTGGTTGCTCTTTCGTTGTCTGGTAACCATATTACAGGAATGATTCCTCNTGAAATTGGAAACTGCTCTGATATCGAAATCCTTGAGCTTGGGTCAAATTCTTTGGCAGGTCCTATTCCCACTGATCTCTCTGGCCTTGCCCATTTGAAAGTGCTTGATTTGAGTTGGAACATTTTATCTGGAGAAATGCCCCAGGATATTTCCAAATGCTTGAAGTTAACTGTTTTGTTAGCTGACCACAACCATCTCTCGGGTGCTATACCAAGGTCATTGGCAAAGCTATCAAACCTGACAAAGCTGGACCTCTCTGATAACAAATTGAGTGGAGGAATCCCCAGTAATCTATCTATGATCCCTGGGTTGGTGTACTTCAATGTTTCTGGTAATAACCTGGAAGGTAAGATACCACCATTGTTGGGTTCTCGGTTCAATGACCCCTCTGTATTTGCAGATAATCAGAATTTATGTGGGAAGCCATTGGATAACAACTGCCAAGAGATAGATGATCGGGACAAAATGAGGTTGATTGTGTTGATCATACTCATTGCATTTGGAGTTTGCTTAATGNCAGCTTGTTGTTGCTTCTATGTTTTCAGCCTAATAAGATGGCGCAAAAGGCTCAAAGCAGCAGTGTCTGGAGAGAAGAAAAAGAGCCCCAGAACGAGTTCTGGAACAAGTCGAGGTCGTGGCAGCACCGATAACAACAATGGTCCAAAGCTTGTCATGTTCAGTACCAAAATCACACTTGCTGAAACAATCGAAGCAACTAGGCAATTCGACGAAGAGAATGTGCTGAGCAGAACAAGGTATGGATTAGTATTCAAGGCTAGCTACAACGACGGAATGGTTCTCTCCATTCGCAGGCTCCCCAATGGATCACTAGATGAAAATATGTTCNGAAAAGAAGCTGAATCACTGGGGAAAATCAAGCACCGGAATTTAACTGTTCTTAGAGGCTATTATGCTGGCCCACCAGACCTGAGACTCCTAGCCTACGATTACATGCCCAATGGAAACCTCGCAACACTCCTCCAAGAAGCATCTCACCAAGATGGCCATGTTCTGAATTGGCCAATGCGACACCTCATCGCACTAGGAATTGCCCGTGGCTTAGCATTTCTGCACCAATCTTCAATAGTCCATGGTGACTTGAAGCCACAAAATGTGCTGTTCGATGCAGATTTCGAAGCCCATTTATCAGATTTCGGGCTAGACCGGCTAATAGTAGTAGCAACCAACCCAGTTGAAGCCTCAGCCTCAGCCTCAGCCTCAGCCTCCACTTCAGCTTCAGTTGGCAACACATTGGGTTACGTTTCGCCAGAAGCTGTGTTAACAGGTGAAGCCACGAAGGAGTGTGACGTGTACAGCTTCGGCATTGTGTTGCTGGAGCTTCTCACTGGGAAGAGACCGGTGATGTTCTCAGAGGACGAGGACATAGTGAAGTGGGTGAAGAAACAGCTACAGAAGGGTCAAGTTGCGGAGCTGCTAGAGCCTGGTTTGCTTGAGCTGGACCCAGAGTCATCGGAATGGGAGGAGTTCTTGCTGGGTGTGAAAGTTGGGTTGCTTTGCACAACACCAGACCCTCTTGATCGACCACCCATGTCTGACATCGTCTTCATGCTCGAAGGTTGNCGTGCTGGGCCTGATATCCCATCCTCTGCGGATCCCACCACCCAACCTTCTCCAGCATAA

Protein Sequence

>Glyur000073s00007793.1
MLLCAPFLSCAQRSSVTEIQALTSFKLNLHDPLGALNGWDPSTPAAPCDWXGVSCNNYRVTELRLPRLQLGGRLSDRISDLRMLKSLSLRSNSFNGTVPPSLSKCTLLRAVFLQDNSFSGEIPPEIGNLAGLQILNVAGNNLSGVIPGELSLGLKYVDLSGNAFSGEIPSTIASLSQLRLMNLSYNQFSGQIPASIGELQHLQYLWLDHNILGGTLPSALANCSSLVHMSADGNTIAGVLPPAISALPKLQVLSLAQXNLTGAVPASIFCNAPSLRVVQLGLNGFTDFAEPEIERCFSALEVLEIQRNRVHGKIPSWLTNVTTITVLDVSDNALSGEIPPEIGNLEKLKELKIAGNSFSGAIPPEIEKCGSLRVVNFEDNRFSGEVPSFLGYLTGLTVLSLGGNHFSGXVPVSFGNLASLETLSLSGNSLSGSMPEVLTGLRNLTTLDLSGNDFSGHVSGRIGNLNRLMVLNLSGNGFYGGIPASLGNLFRLTTLDLSKQNLSGELPFELSGLPSLQIIALQENKLSGNVPEGFSSLRSLQYMNLSSNGFSGHIPKNYGFLQSLVALSLSGNHITGMIPXEIGNCSDIEILELGSNSLAGPIPTDLSGLAHLKVLDLSWNILSGEMPQDISKCLKLTVLLADHNHLSGAIPRSLAKLSNLTKLDLSDNKLSGGIPSNLSMIPGLVYFNVSGNNLEGKIPPLLGSRFNDPSVFADNQNLCGKPLDNNCQEIDDRDKMRLIVLIILIAFGVCLMXACCCFYVFSLIRWRKRLKAAVSGEKKKSPRTSSGTSRGRGSTDNNNGPKLVMFSTKITLAETIEATRQFDEENVLSRTRYGLVFKASYNDGMVLSIRRLPNGSLDENMFXKEAESLGKIKHRNLTVLRGYYAGPPDLRLLAYDYMPNGNLATLLQEASHQDGHVLNWPMRHLIALGIARGLAFLHQSSIVHGDLKPQNVLFDADFEAHLSDFGLDRLIVVATNPVEASASASASASTSASVGNTLGYVSPEAVLTGEATKECDVYSFGIVLLELLTGKRPVMFSEDEDIVKWVKKQLQKGQVAELLEPGLLELDPESSEWEEFLLGVKVGLLCTTPDPLDRPPMSDIVFMLEGXRAGPDIPSSADPTTQPSPA

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00073	192809	196189	-

Gene family

Gene family	subfamily
Protein Kinases Family	PPC:1.12.4

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0006468 protein phosphorylation

molecular_function

GO:0004672 protein kinase activity

GO:0005515 protein binding

GO:0005524 ATP binding

GO:0016772 transferase activity, transferring phosphorus-containing groups

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000073s00007793.1	PF08263.7	LRRNT_2	18	56	3.50E-10
Glyur000073s00007793.1	PF13855.1	LRR_8	395	453	8.60E-12
Glyur000073s00007793.1	PF13855.1	LRR_8	491	549	4.30E-08
Glyur000073s00007793.1	PF13855.1	LRR_8	636	694	1.40E-06
Glyur000073s00007793.1	PF00069.20	Pkinase	830	1050	5.10E-32

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	0.446
SRR1783600	control	0.495
SRR1783602	moderate drought stress	0.597
SRR1811619	moderate drought stress	0.615

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	1.899
DRR006520	Root Summer glycyrrhizin high producing strain	1.903
DRR006521	Root Winter glycyrrhizin high producing strain	0.041
DRR006522	Root Winter glycyrrhizin high producing strain	0.032
DRR006523	Root Summer glycyrrhizin low producing strain	1.665
DRR006524	Root Summer glycyrrhizin low producing strain	1.552
DRR006525	Leaf Summer glycyrrhizin high producing strain	0.356
DRR006526	Leaf Summer glycyrrhizin high producing strain	0.356

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	0.957
SRR2868004	Drought Stress (root)	0.398
SRR2967015	Control (root)	0.690

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	0.217
SRR9715740	Leaf	0.121
SRR9715741	Leaf	0.078
SRR9715739	Root	0.490
SRR9715742	Root	0.640
SRR9715743	Root	0.663

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.168
SRR8749028	MeJA induced 9h	0.079
SRR8749029	MeJA induced 9h	0.036
SRR8749030	Uninduced	0.049
SRR8749031	Uninduced	0.022
SRR8749032	Uninduced	0.051

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	0.914
SRR8400027	Control - Root	1.011