Gene detail

Gene detail information of Glyur000073s00007786

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT2G18040.1	3.00E-53	peptidylprolyl cis/trans isomerase, NIMA-interacting 1
NR	XP_004509352.1	1.29E-73	PREDICTED: peptidyl-prolyl cis-trans isomerase Pin1-like [Cicer arietinum]
COG	YP_421837.1	5.00E-21	parvulin-like peptidyl-prolyl isomerase [Magnetospirillum magneticum AMB-1]
Swissprot	tr\|Q94G00\|PIN1_MALDO	2.00E-71	Peptidyl-prolyl cis-trans isomerase Pin1
trEMBL	tr\|V7CFQ6\|V7CFQ6_PHAVU	3.00E-73	Uncharacterized protein {ECO:0000313\|EMBL:ESW28120.1}

Sequence

Transcript Sequence

>Glyur000073s00007786.1
CACAGTCACAGTAGCAGAAGACCGATTATGTGACACGTGGCGCAATGGGAGTTACGNGATTTTTCTGTACTCACTGGATCTACATTGAACCTAAACCGTCCGATTCAACTCAAACGGACGTTTCAGATGTGCAGAAAATATTGGTAATAACCTCCAAATCCAGGACCACTCTATAAATACCGAAGATTGGTAAGTTAACTCAGTTCTGTTATCTCTCACTGCGAGTAGGGTGTGTGAACTTGACGGCGAAGATAGAGTCCGATCGGAAGAGGAAGAAATCGTCGATCTCGGCGTCGGATCGAGAGGAGAAGGAAAAACGTACTAAGAAGAAGGTAACGAAGATGTCGTCGTCGAACAGGCAGGGCGGTGAGGTTAGGGCATCGCACATATTGATAAAGCATGAAGGTTCTAGAAGGAAGGCCTCCTGGAAGGATCCAGAAGGCCACGTCATCAAGAGCACCACCAGGGAAAGCGCCGTCGCTCAGCTCAAGGCGCTCCGTGACGACATCGTTTCTGGCAAGGCCAATTTCGAGGATGTTGCGTCTCGCTTCTCCGATTGCAGCTCTGCCAAACGCGGCGGCGATCTCGGTCCTTTTGGTCGTGGCCAGATGCAGAAGCCTTTTGAAGAAGCAACTTTTGCTCTTAAAGTTGGTGAAATCAGTGACATTGTGGATACTGACAGTGGAGTCCACATAATCAAGAGAACAAATTGATAATTCCACGGAGTAATCTCCTTTTAGGGAGAACAGTAACATTTGTAGAAGATTCGGGATTGTTGTTCTGATCAAAATCTGTTGACATATCGATGATTTAGACATGGCAGAGCCATGTTTTTGGATGATATATTGTTTTCACTTCACAATTAAAAACCTGTANCTGTATGCTTGTAATTTTGAAAAACATTCATGGGGTTTGTACTCTATTGTCTTTGGCAGGTGCCTGTCGTGAATTCTCATCGTTACCAATTATAAACATGGTTCTACAGTATCAAATAGAAATAGAATGTCACTTAATAT

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00073	141225	143671	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
K09578	PIN1	EC:5.2.1.8	RIG-I-like receptor signaling pathway	map04622

Gene Ontology

molecular_function
GO:0016853 isomerase activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000073s00007786.1	PF00639.16	Rotamase	15	122	1.60E-29

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	31.105
SRR1783600	control	31.086
SRR1783602	moderate drought stress	21.789
SRR1811619	moderate drought stress	21.513

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	57.205
DRR006520	Root Summer glycyrrhizin high producing strain	56.888
DRR006521	Root Winter glycyrrhizin high producing strain	51.612
DRR006522	Root Winter glycyrrhizin high producing strain	50.540
DRR006523	Root Summer glycyrrhizin low producing strain	53.811
DRR006524	Root Summer glycyrrhizin low producing strain	53.785
DRR006525	Leaf Summer glycyrrhizin high producing strain	47.502
DRR006526	Leaf Summer glycyrrhizin high producing strain	47.000

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	162.020
SRR2868004	Drought Stress (root)	142.082
SRR2967015	Control (root)	121.063

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	148.476
SRR9715740	Leaf	170.952
SRR9715741	Leaf	162.473
SRR9715739	Root	69.208
SRR9715742	Root	83.133
SRR9715743	Root	77.480

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	69.535
SRR8749028	MeJA induced 9h	39.240
SRR8749029	MeJA induced 9h	40.133
SRR8749030	Uninduced	14.554
SRR8749031	Uninduced	6.072
SRR8749032	Uninduced	11.142

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	139.277
SRR8400027	Control - Root	129.078